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Computer analysis of the bone regeneration strength in a model system of osteosynthesis by the Ilizarov fixator with static loads
Computer Research and Modeling, 2014, v. 6, no. 3, pp. 427-440Views (last year): 3.The adequate complexity three-dimensional finite element model of biomechanical system with space, shell and beam-type elements was built. The model includes the Ilizarov fixator and tibial bone’s simulator with the regenerating tissue at the fracture location. The proposed model allows us to specify the orthotropic elastic properties of tibial bone model in cortical and trabecular zones. It is also possible to change the basic geometrical and mechanical characteristics of biomechanical system, change the finite element mash density and define the different external loads, such as pressure on the bone and compression or distraction between the repositioned rings of Ilizarov device.
By using special APDL ANSYS program macros the mode of deformation was calculated in the fracture zone for various static loads on the simulator bone, for compression or distraction between the repositioned rings and for various mechanical properties during different stages of the bone regenerate formation (gelatinous, cartilaginous, trabecular and cortical bone remodeling). The obtained results allow us to estimate the permissible values of the external pressure on the bone and of the displacements of the Ilizarov fixator rings for different stages of the bone regeneration, based on the admittance criterion for the maximum of the stresses in the callus. The presented data can be used in a clinical condition for planning, realization and monitoring of the power modes for transosseous osteosynthesis with the external Ilizarov fixator.
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Numerical studies of the parameters of the perturbed region formed in the lower ionosphere under the action of a directed radio waves flux from a terrestrial source
Computer Research and Modeling, 2018, v. 10, no. 5, pp. 679-708Views (last year): 17.The paper presents a physico-mathematical model of the perturbed region formed in the lower D-layer of the ionosphere under the action of directed radio emission flux from a terrestrial stand of the megahertz frequency range, obtained as a result of comprehensive theoretical studies. The model is based on the consideration of a wide range of kinetic processes taking into account their nonequilibrium and in the two-temperature approximation for describing the transformation of the radio beam energy absorbed by electrons. The initial data on radio emission achieved by the most powerful radio-heating stands are taken in the paper. Their basic characteristics and principles of functioning, and features of the altitude distribution of the absorbed electromagnetic energy of the radio beam are briefly described. The paper presents the decisive role of the D-layer of the ionosphere in the absorption of the energy of the radio beam. On the basis of theoretical analysis, analytical expressions are obtained for the contribution of various inelastic processes to the distribution of the absorbed energy, which makes it possible to correctly describe the contribution of each of the processes considered. The work considers more than 60 components. The change of the component concentration describe about 160 reactions. All the reactions are divided into five groups according to their physical content: ionization-chemical block, excitation block of metastable electronic states, cluster block, excitation block of vibrational states and block of impurities. Blocks are interrelated and can be calculated both jointly and separately. The paper presents the behavior of the parameters of the perturbed region in daytime and nighttime conditions is significantly different at the same radio flux density: under day conditions, the maximum electron concentration and temperature are at an altitude of ~45–55 km; in night ~80 km, with the temperature of heavy particles rapidly increasing, which leads to the occurrence of a gas-dynamic flow. Therefore, a special numerical algorithm are developed to solve two basic problems: kinetic and gas dynamic. Based on the altitude and temporal behavior of concentrations and temperatures, the algorithm makes it possible to determine the ionization and emission of the ionosphere in the visible and infrared spectral range, which makes it possible to evaluate the influence of the perturbed region on radio engineering and optoelectronic devices used in space technology.
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Modeling of the effective environment in the Republic of Tatarstan using transport data
Computer Research and Modeling, 2021, v. 13, no. 2, pp. 395-404Automated urban traffic monitoring systems are widely used to solve various tasks in intelligent transport systems of different regions. They include video enforcement, video surveillance, traffic management system, etc. Effective traffic management and rapid response to traffic incidents require continuous monitoring and analysis of information from these complexes, as well as time series forecasting for further anomaly detection in traffic flow. To increase the forecasting quality, data fusion from different sources is needed. It will reduce the forecasting error, related to possible incorrect values and data gaps. We implemented the approach for short-term and middle-term forecasting of traffic flow (5, 10, 15 min) based on data fusion from video enforcement and video surveillance systems. We made forecasting using different recurrent neural network architectures: LSTM, GRU, and bidirectional LSTM with one and two layers. We investigated the forecasting quality of bidirectional LSTM with 64 and 128 neurons in hidden layers. The input window size (1, 4, 12, 24, 48) was investigated. The RMSE value was used as a forecasting error. We got minimum RMSE = 0.032405 for basic LSTM with 64 neurons in the hidden layer and window size = 24.
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Comparative analysis of human adaptation to the growth of visual information in the tasks of recognizing formal symbols and meaningful images
Computer Research and Modeling, 2021, v. 13, no. 3, pp. 571-586We describe an engineering-psychological experiment that continues the study of ways to adapt a person to the increasing complexity of logical problems by presenting a series of problems of increasing complexity, which is determined by the volume of initial data. Tasks require calculations in an associative or non-associative system of operations. By the nature of the change in the time of solving the problem, depending on the number of necessary operations, we can conclude that a purely sequential method of solving problems or connecting additional brain resources to the solution in parallel mode. In a previously published experimental work, a person in the process of solving an associative problem recognized color images with meaningful images. In the new study, a similar problem is solved for abstract monochrome geometric shapes. Analysis of the result showed that for the second case, the probability of the subject switching to a parallel method of processing visual information is significantly reduced. The research method is based on presenting a person with two types of tasks. One type of problem contains associative calculations and allows a parallel solution algorithm. Another type of problem is the control one, which contains problems in which calculations are not associative and parallel algorithms are ineffective. The task of recognizing and searching for a given object is associative. A parallel strategy significantly speeds up the solution with relatively small additional resources. As a control series of problems (to separate parallel work from the acceleration of a sequential algorithm), we use, as in the previous experiment, a non-associative comparison problem in cyclic arithmetic, presented in the visual form of the game “rock, paper, scissors”. In this problem, the parallel algorithm requires a large number of processors with a small efficiency coefficient. Therefore, the transition of a person to a parallel algorithm for solving this problem is almost impossible, and the acceleration of processing input information is possible only by increasing the speed. Comparing the dependence of the solution time on the volume of source data for two types of problems allows us to identify four types of strategies for adapting to the increasing complexity of the problem: uniform sequential, accelerated sequential, parallel computing (where possible), or undefined (for this method) strategy. The Reducing of the number of subjects, who switch to a parallel strategy when encoding input information with formal images, shows the effectiveness of codes that cause subject associations. They increase the speed of human perception and processing of information. The article contains a preliminary mathematical model that explains this phenomenon. It is based on the appearance of a second set of initial data, which occurs in a person as a result of recognizing the depicted objects.
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Modelling of cytokine storm in respiratory viral infections
Computer Research and Modeling, 2022, v. 14, no. 3, pp. 619-645In this work, we develop a model of the immune response to respiratory viral infections taking into account some particular properties of the SARS-CoV-2 infection. The model represents a system of ordinary differential equations for the concentrations of epithelial cells, immune cells, virus and inflammatory cytokines. Conventional analysis of the existence and stability of stationary points is completed by numerical simulations in order to study dynamics of solutions. Behavior of solutions is characterized by large peaks of virus concentration specific for acute respiratory viral infections.
At the first stage, we study the innate immune response based on the protective properties of interferon secreted by virus-infected cells. On the other hand, viral infection down-regulates interferon production. Their competition can lead to the bistability of the system with different regimes of infection progression with high or low intensity. In the case of infection outbreak, the incubation period and the maximal viral load depend on the initial viral load and the parameters of the immune response. In particular, increase of the initial viral load leads to shorter incubation period and higher maximal viral load.
In order to study the emergence and dynamics of cytokine storm, we consider proinflammatory cytokines produced by cells of the innate immune response. Depending on parameters of the model, the system can remain in the normal inflammatory state specific for viral infections or, due to positive feedback between inflammation and immune cells, pass to cytokine storm characterized by excessive production of proinflammatory cytokines. Furthermore, inflammatory cell death can stimulate transition to cytokine storm. However, it cannot sustain it by itself without the innate immune response. Assumptions of the model and obtained results are in qualitative agreement with the experimental and clinical data.
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Model of assimilation potential in lake ecosystem on the example of biogenic pollutants
Computer Research and Modeling, 2024, v. 16, no. 6, pp. 1447-1465A model of biogeochemical cycles for nutrient transformation in the ecosystem of a water body has been developed using the example of the Lake Teletskoye (TL) to assess its assimilation potential in the absence of direct measurements for total nitrogen and phosphorus concentrations, instead of which the corresponding simulated data. The validity is justified by checking the adequacy of the simulation results to the data of average monthly long-term observations for all variables of the state for model. The model was calibrated with taking into account data from observations of water quality in 1985–2003, as well as a scenario version of the hydrological regime in 2016. The analysis of the intra-annual changeability of state variables, nitrogen and phosphorus inputs and outputs in TL water is given. The preliminary values of the permissible load N and P on the lake is accessed. The model analysis showed that the lake has practically no assimilation potential with respect to phosphorus compounds. The corresponding values of concentrations are equal to: Ptot. = 0.013 gP/m3, which is equal to the average annual content over the period of 18-year observations. The threshold content of Ntot. = 0.895 gN/m3. The assimilation potential for nitrogen is small, within the second significant digit after the decimal point, bearing in mind that its simulated average annual value is 0.836 gN/m3. The results of simulation indicate that the TL waters, due to the low water temperatures, along with their unique purity, differ in an extremely poorly developed community of hydrobionts. In the case of other lakes, the increase of anthropogenic pressure could be mitigated by utilization due to the vital activity of sufficiently developed hydrobionts communities. Here, there is no sufficient self-purification resource, and a relatively small increase in anthropogenic load can lead to a violation of the sustainability.
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Impact of spatial resolution on mobile robot path optimality in two-dimensional lattice models
Computer Research and Modeling, 2025, v. 17, no. 6, pp. 1131-1148This paper examines the impact of the spatial resolution of a discretized (lattice) representation of the environment on the efficiency and correctness of optimal pathfinding in complex environments. Scenarios are considered that may include bottlenecks, non-uniform obstacle distributions, and areas of increased safety requirements in the immediate vicinity of obstacles. Despite the widespread use of lattice representations of the environment in robotics due to their compatibility with sensor data and support for classical trajectory planning algorithms, the resolution of these lattices has a significant impact on both goal reachability and optimal path performance. An algorithm is proposed that combines environmental connectivity analysis, trajectory optimization, and geometric safety refinement. In the first stage, the Leath algorithm is used to estimate the reachability of the target point by identifying a connected component containing the starting position. Upon confirmation of the target point’s reachability, the A* algorithm is applied to the nodes of this component in the second stage to construct a path that simultaneously minimizes both the path length and the risk of collision. In the third stage, a refined obstacle distance estimate is performed for nodes located in safety zones using a combination of the Gilbert – Johnson –Keerthi (GJK) and expanding polyhedron (EPA) algorithms. Experimental analysis revealed a nonlinear relationship between the probability of the existence and effectiveness of an optimal path and the lattice parameters. Specifically, reducing the spatial resolution of the lattice increases the likelihood of connectivity loss and target unreachability, while increasing its spatial resolution increases computational complexity without a proportional improvement in the optimal path’s performance.
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Physics-assisted cascade neural network model for predicting pressure losses of a three-phase mixture in a pipeline
Computer Research and Modeling, 2026, v. 18, no. 1, pp. 117-131The paper presents a cascade model of a physically supported neural network designed to predict pressure drop in three-phase flow (oil, gas, water) in a pipe section with various angles of inclination. To overcome the constraints of existing empirical correlations and computation-intensive numerical modeling methods, we propose an architecture that decomposes the problem into three sequential physically interpretable subtasks: regression prediction of the fluid hold-up coefficient, fluid flow regime classification, and pressure gradient evaluation. Each subtask is solved by a separate fully connected neural network, the output of which is passed to the next model in the cascade. Training and testing of the proposed architecture was performed on an extensive synthetic dataset (8 · 107 records) generated using a semi-empirical model. Verification is performed on independent experimental data. A comparative analysis with a single fully connected (non-cascade) neural network is made, and the sensitivity of the models is examined using Sobol and Borgonovo methods. The cascade model demonstrates superior accuracy and ensures high interpretability of results by providing intermediate physical parameters (fluid hold-up coefficient, flow regime). The developed model has low computational complexity, which allows it to be used in real-time systems and digital twins of hydraulic systems in the oil and gas industry.
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On one particular model of a mixture of the probability distributions in the radio measurements
Computer Research and Modeling, 2012, v. 4, no. 3, pp. 563-568Views (last year): 3. Citations: 7 (RSCI).This paper presents a model mixture of probability distributions of signal and noise. Typically, when analyzing the data under conditions of uncertainty it is necessary to use nonparametric tests. However, such an analysis of nonstationary data in the presence of uncertainty on the mean of the distribution and its parameters may be ineffective. The model involves the implementation of a case of a priori non-parametric uncertainty in the processing of the signal at a time when the separation of signal and noise are related to different general population, is feasible.
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System to store DNA physical properties profiles with application to the promoters of Escherichia coli
Computer Research and Modeling, 2013, v. 5, no. 3, pp. 443-450Views (last year): 3.Database to store, search and retrieve DNA physical properties profiles has been developed and its use for analysis of E. coli promoters has been demonstrated. Unique feature of the database is in its ability to handle whole profile as single internal object type in a way similar to integers or character strings. To demonstrate utility of such database it was populated with data of 1227 known promoters, their nucleotide sequence, profile of electrostatic potential, transcription factor binding sites. Each promoter is also connected to all genes, whose transcription is controlled by that promoter. Content of the database is available for search via web interface. Source code of profile datatype and library to work with it from R/Bioconductor are available from the internet, dump of the database is available from authors by request.
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