Результаты поиска по 'identifiability analysis':
Найдено статей: 55
  1. Safiullina L.F., Gubaydullin I.M.
    Analysis of the identifiability of the mathematical model of propane pyrolysis
    Computer Research and Modeling, 2021, v. 13, no. 5, pp. 1045-1057

    The article presents the numerical modeling and study of the kinetic model of propane pyrolysis. The study of the reaction kinetics is a necessary stage in modeling the dynamics of the gas flow in the reactor.

    The kinetic model of propane pyrolysis is a nonlinear system of ordinary differential equations of the first order with parameters, the role of which is played by the reaction rate constants. Math modeling of processes is based on the use of the mass conservation law. To solve an initial (forward) problem, implicit methods for solving stiff ordinary differential equation systems are used. The model contains 60 input kinetic parameters and 17 output parameters corresponding to the reaction substances, of which only 9 are observable. In the process of solving the problem of estimating parameters (inverse problem), there is a question of non-uniqueness of the set of parameters that satisfy the experimental data. Therefore, before solving the inverse problem, the possibility of determining the parameters of the model is analyzed (analysis of identifiability).

    To analyze identifiability, we use the orthogonal method, which has proven itself well for analyzing models with a large number of parameters. The algorithm is based on the analysis of the sensitivity matrix by the methods of differential and linear algebra, which shows the degree of dependence of the unknown parameters of the models on the given measurements. The analysis of sensitivity and identifiability showed that the parameters of the model are stably determined from a given set of experimental data. The article presents a list of model parameters from most to least identifiable. Taking into account the analysis of the identifiability of the mathematical model, restrictions were introduced on the search for less identifiable parameters when solving the inverse problem.

    The inverse problem of estimating the parameters was solved using a genetic algorithm. The article presents the found optimal values of the kinetic parameters. A comparison of the experimental and calculated dependences of the concentrations of propane, main and by-products of the reaction on temperature for different flow rates of the mixture is presented. The conclusion about the adequacy of the constructed mathematical model is made on the basis of the correspondence of the results obtained to physicochemical laws and experimental data.

  2. Matveev A.V.
    Mathematical features of individual dosimetric planning of radioiodotherapy based on pharmacokinetic modeling
    Computer Research and Modeling, 2024, v. 16, no. 3, pp. 773-784

    When determining therapeutic absorbed doses in the process of radioiodine therapy, the method of individual dosimetric planning is increasingly used in Russian medicine. However, for the successful implementation of this method, it is necessary to have appropriate software that allows modeling the pharmacokinetics of radioiodine in the patient’s body and calculate the necessary therapeutic activity of a radiopharmaceutical drug to achieve the planned therapeutic absorbed dose in the thyroid gland.

    Purpose of the work: development of a software package for pharmacokinetic modeling and calculation of individual absorbed doses in radioiodine therapy based on a five-chamber model of radioiodine kinetics using two mathematical optimization methods. The work is based on the principles and methods of RFLP pharmacokinetics (chamber modeling). To find the minimum of the residual functional in identifying the values of the transport constants of the model, the Hook – Jeeves method and the simulated annealing method were used. Calculation of dosimetric characteristics and administered therapeutic activity is based on the method of calculating absorbed doses using the functions of radioiodine activity in the chambers found during modeling. To identify the parameters of the model, the results of radiometry of the thyroid gland and urine of patients with radioiodine introduced into the body were used.

    A software package for modeling the kinetics of radioiodine during its oral intake has been developed. For patients with diffuse toxic goiter, the transport constants of the model were identified and individual pharmacokinetic and dosimetric characteristics (elimination half-lives, maximum thyroid activity and time to reach it, absorbed doses to critical organs and tissues, administered therapeutic activity) were calculated. The activity-time relationships for all cameras in the model are obtained and analyzed. A comparative analysis of the calculated pharmacokinetic and dosimetric characteristics calculated using two mathematical optimization methods was performed. Evaluation completed the stunning-effect and its contribution to the errors in calculating absorbed doses. From a comparative analysis of the pharmacokinetic and dosimetric characteristics calculated in the framework of two optimization methods, it follows that the use of a more complex mathematical method for simulating annealing in a software package does not lead to significant changes in the values of the characteristics compared to the simple Hook – Jeeves method. Errors in calculating absorbed doses in the framework of these mathematical optimization methods do not exceed the spread of absorbed dose values from the stunning-effect.

  3. Pak S.Y., Abakumov A.I.
    Model study of gas exchange processes in phytoplankton under the influence of photosynthetic processes and metabolism
    Computer Research and Modeling, 2025, v. 17, no. 5, pp. 963-985

    The dynamics of various gaseous substances is of great importance in the vital activity of phytoplankton. The dynamics of oxygen and carbon dioxide are the most indicative for aquatic plant communities. These dynamics are important for the global ratio of oxygen and carbon dioxide in the Earth’s atmosphere. The goal of the work is to use the mathematical modeling to study the role of oxygen and carbon dioxide in the life of aquatic plant organisms, in particular, the phytoplankton. The series of mathematical models of the dynamics of oxygen and carbon dioxide in the phytoplankton body are proposed. The series of models are built according to the increasing degree of complexity and the number of modeled processes. At first, the simplest model of only gas dynamics is considered, then there is a transition to models with the interaction and mutual influence of gases on the formation and dynamics of energy-intensive substances and on growth processes in the plant organism. Photosynthesis and respiration are considered as the basis of the models. The models study the properties of solutions: equilibrium solutions and their stability, dynamic properties of solutions. Various types of equilibrium stability, possible complex non-linear dynamics have been identified. These properties allow better orientation when choosing a model to describe processes with a known set of data and formulated modeling goals. An example of comparing an experiment with its model description is given. The next goal of modeling — to link gas dynamics for oxygen and carbon dioxide with metabolic processes in plant organisms. In the future, model designs will be applied to the analysis of ecosystem behavior when the habitat changes, including the content of gaseous substances.

  4. Borisova L.R., Kuznetsova A.V., Sergeeva N.V., Sen'ko O.V.
    Comparison of Arctic zone RF companies with different Polar Index ratings by economic criteria with the help of machine learning tools
    Computer Research and Modeling, 2020, v. 12, no. 1, pp. 201-215

    The paper presents a comparative analysis of the enterprises of the Arctic Zone of the Russian Federation (AZ RF) on economic indicators in accordance with the rating of the Polar index. This study includes numerical data of 193 enterprises located in the AZ RF. Machine learning methods are applied, both standard, from open source, and own original methods — the method of Optimally Reliable Partitions (ORP), the method of Statistically Weighted Syndromes (SWS). Held split, indicating the maximum value of the functional quality, this study used the simplest family of different one-dimensional partition with a single boundary point, as well as a collection of different two-dimensional partition with one boundary point on each of the two combining variables. Permutation tests allow not only to evaluate the reliability of the data of the revealed regularities, but also to exclude partitions with excessive complexity from the set of the revealed regularities. Patterns connected the class number and economic indicators are revealed using the SDT method on one-dimensional indicators. The regularities which are revealed within the framework of the simplest one-dimensional model with one boundary point and with significance not worse than p < 0.001 are also presented in the given study. The so-called sliding control method was used for reliable evaluation of such diagnostic ability. As a result of these studies, a set of methods that had sufficient effectiveness was identified. The collective method based on the results of several machine learning methods showed the high importance of economic indicators for the division of enterprises in accordance with the rating of the Polar index. Our study proved and showed that those companies that entered the top Rating of the Polar index are generally recognized by financial indicators among all companies in the Arctic Zone. However it would be useful to supplement the list of indicators with ecological and social criteria.

  5. Kovalenko I.B., Dreval V.D., Fedorov V.A., Kholina E.G., Gudimchuk N.B.
    Microtubule protofilament bending characterization
    Computer Research and Modeling, 2020, v. 12, no. 2, pp. 435-443

    This work is devoted to the analysis of conformational changes in tubulin dimers and tetramers, in particular, the assessment of the bending of microtubule protofilaments. Three recently exploited approaches for estimating the bend of tubulin protofilaments are reviewed: (1) measurement of the angle between the vector passing through the H7 helices in $\alpha$ and $\beta$ tubulin monomers in the straight structure and the same vector in the curved structure of tubulin; (2) measurement of the angle between the vector, connecting the centers of mass of the subunit and the associated GTP nucleotide, and the vector, connecting the centers of mass of the same nucleotide and the adjacent tubulin subunit; (3) measurement of the three rotation angles of the bent tubulin subunit relative to the straight subunit. Quantitative estimates of the angles calculated at the intra- and inter-dimer interfaces of tubulin in published crystal structures, calculated in accordance with the three metrics, are presented. Intra-dimer angles of tubulin in one structure, measured by the method (3), as well as measurements by this method of the intra-dimer angles in different structures, were more similar, which indicates a lower sensitivity of the method to local changes in tubulin conformation and characterizes the method as more robust. Measuring the angle of curvature between H7-helices (method 1) produces somewhat underestimated values of the curvature per dimer. Method (2), while at first glance generating the bending angle values, consistent the with estimates of curved protofilaments from cryoelectron microscopy, significantly overestimates the angles in the straight structures. For the structures of tubulin tetramers in complex with the stathmin protein, the bending angles calculated with all three metrics varied quite significantly for the first and second dimers (up to 20% or more), which indicates the sensitivity of all metrics to slight variations in the conformation of tubulin dimers within these complexes. A detailed description of the procedures for measuring the bending of tubulin protofilaments, as well as identifying the advantages and disadvantages of various metrics, will increase the reproducibility and clarity of the analysis of tubulin structures in the future, as well as it will hopefully make it easier to compare the results obtained by various scientific groups.

  6. Gesture recognition is an urgent challenge in developing systems of human-machine interfaces. We analyzed machine learning methods for gesture classification based on electromyographic muscle signals to identify the most effective one. Methods such as the naive Bayesian classifier (NBC), logistic regression, decision tree, random forest, gradient boosting, support vector machine (SVM), $k$-nearest neighbor algorithm, and ensembles (NBC and decision tree, NBC and gradient boosting, gradient boosting and decision tree) were considered. Electromyography (EMG) was chosen as a method of obtaining information about gestures. This solution does not require the location of the hand in the field of view of the camera and can be used to recognize finger movements. To test the effectiveness of the selected methods of gesture recognition, a device was developed for recording the EMG signal, which includes three electrodes and an EMG sensor connected to the microcontroller and the power supply. The following gestures were chosen: clenched fist, “thumb up”, “Victory”, squeezing an index finger and waving a hand from right to left. Accuracy, precision, recall and execution time were used to evaluate the effectiveness of classifiers. These parameters were calculated for three options for the location of EMG electrodes on the forearm. According to the test results, the most effective methods are $k$-nearest neighbors’ algorithm, random forest and the ensemble of NBC and gradient boosting, the average accuracy of ensemble for three electrode positions was 81.55%. The position of the electrodes was also determined at which machine learning methods achieve the maximum accuracy. In this position, one of the differential electrodes is located at the intersection of the flexor digitorum profundus and flexor pollicis longus, the second — above the flexor digitorum superficialis.

  7. Makarov I.S., Bagantsova E.R., Iashin P.A., Kovaleva M.D., Gorbachev R.A.
    Development of and research on an algorithm for distinguishing features in Twitter publications for a classification problem with known markup
    Computer Research and Modeling, 2023, v. 15, no. 1, pp. 171-183

    Social media posts play an important role in demonstration of financial market state, and their analysis is a powerful tool for trading. The article describes the result of a study of the impact of social media activities on the movement of the financial market. The top authoritative influencers are selected. Twitter posts are used as data. Such texts usually include slang and abbreviations, so methods for preparing primary text data, including Stanza, regular expressions are presented. Two approaches to the representation of a point in time in the format of text data are considered. The difference of the influence of a single tweet or a whole package consisting of tweets collected over a certain period of time is investigated. A statistical approach in the form of frequency analysis is also considered, metrics defined by the significance of a particular word when identifying the relationship between price changes and Twitter posts are introduced. Frequency analysis involves the study of the occurrence distributions of various words and bigrams in the text for positive, negative or general trends. To build the markup, changes in the market are processed into a binary vector using various parameters, thus setting the task of binary classification. The parameters for Binance candlesticks are sorted out for better description of the movement of the cryptocurrency market, their variability is also explored in this article. Sentiment is studied using Stanford Core NLP. The result of statistical analysis is relevant to feature selection for further binary or multiclass classification tasks. The presented methods of text analysis contribute to the increase of the accuracy of models designed to solve natural language processing problems by selecting words, improving the quality of vectorization. Such algorithms are often used in automated trading strategies to predict the price of an asset, the trend of its movement.

  8. Dhivyadharshini B., Senthamarai R.
    Modeling the indirect impact of rhinoceros beetle control on red palm weevils in coconut plantations
    Computer Research and Modeling, 2025, v. 17, no. 4, pp. 737-752

    In this paper, a mathematical model is developed and analyzed to assess the indirect impact of controlling rhinoceros beetles on red palm weevil populations in coconut plantations. The model consists of a system of six non-linear ordinary differential equations (ODEs), capturing the interactions among healthy and infected coconut trees, rhinoceros beetles, red palm weevils, and the oryctes virus. The model ensures biological feasibility through positivity and boundedness analysis. The basic reproduction number $R_0$ is derived using the next-generation matrix method. Both local and global stability of the equilibrium points are analyzed to determine conditions for pest persistence or eradication. Sensitivity analysis identifies the most influential parameters for pest management. Numerical simulations reveal that by effectively controlling the rhinoceros beetle population particularly through infection with the oryctes virus, the spread of the red palm weevil can also be suppressed. This indirect control mechanism helps to protect the coconut tree population more efficiently and supports sustainable pest management in coconut plantations.

  9. Shakhgeldyan K.I., Kuksin N.S., Domzhalov I.G., Pak R.L., Geltser B.I.
    Random forest of risk factors as a predictive tool for adverse events in clinical medicine
    Computer Research and Modeling, 2025, v. 17, no. 5, pp. 987-1004

    The aim of study was to develop an ensemble machine learning method for constructing interpretable predictive models and to validate it using the example of predicting in-hospital mortality (IHM) in patients with ST-segment elevation myocardial infarction (STEMI).

    A retrospective cohort study was conducted using data from 5446 electronic medical records of STEMI patients who underwent percutaneous coronary intervention (PCI). Patients were divided into two groups: 335 (6.2%) patients who died during hospitalization and 5111 (93.8%) patients with a favourable in-hospital outcome. A pool of potential predictors was formed using statistical methods. Through multimetric categorization (minimizing p-values, maximizing the area under the ROC curve (AUC), and SHAP value analysis), decision trees, and multivariable logistic regression (MLR), predictors were transformed into risk factors for IHM. Predictive models for IHM were developed using MLR, Random Forest Risk Factors (RandFRF), Stochastic Gradient Boosting (XGboost), Random Forest (RF), Adaptive boosting, Gradient Boosting, Light Gradient-Boosting Machine, Categorical Boosting (CatBoost), Explainable Boosting Machine and Stacking methods.

    Authors developed the RandFRF method, which integrates the predictive outcomes of modified decision trees, identifies risk factors and ranks them based on their contribution to the risk of adverse outcomes. RandFRF enables the development of predictive models with high discriminative performance (AUC 0.908), comparable to models based on CatBoost and Stacking (AUC 0.904 and 0.908, respectively). In turn, risk factors provide clinicians with information on the patient’s risk group classification and the extent of their impact on the probability of IHM. The risk factors identified by RandFRF can serve not only as rationale for the prediction results but also as a basis for developing more accurate models.

  10. Zenkov A.V.
    A novel method of stylometry based on the statistic of numerals
    Computer Research and Modeling, 2017, v. 9, no. 5, pp. 837-850

    A new method of statistical analysis of texts is suggested. The frequency distribution of the first significant digits in numerals of English-language texts is considered. We have taken into account cardinal as well as ordinal numerals expressed both in figures, and verbally. To identify the author’s use of numerals, we previously deleted from the text all idiomatic expressions and set phrases accidentally containing numerals, as well as itemizations and page numbers, etc. Benford’s law is found to hold approximately for the frequencies of various first significant digits of compound literary texts by different authors; a marked predominance of the digit 1 is observed. In coherent authorial texts, characteristic deviations from Benford’s law arise which are statistically stable significant author peculiarities that allow, under certain conditions, to consider the problem of authorship and distinguish between texts by different authors. The text should be large enough (at least about 200 kB). At the end of $\{1, 2, \ldots, 9\}$ digits row, the frequency distribution is subject to strong fluctuations and thus unrepresentative for our purpose. The aim of the theoretical explanation of the observed empirical regularity is not intended, which, however, does not preclude the applicability of the proposed methodology for text attribution. The approach suggested and the conclusions are backed by the examples of the computer analysis of works by W.M. Thackeray, M. Twain, R. L. Stevenson, J. Joyce, sisters Bront¨e, and J.Austen. On the basis of technique suggested, we examined the authorship of a text earlier ascribed to L. F. Baum (the result agrees with that obtained by different means). We have shown that the authorship of Harper Lee’s “To Kill a Mockingbird” pertains to her, whereas the primary draft, “Go Set a Watchman”, seems to have been written in collaboration with Truman Capote. All results are confirmed on the basis of parametric Pearson’s chi-squared test as well as non-parametric Mann –Whitney U test and Kruskal –Wallis test.

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