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DNA conformational dynamics: approach to the physical mapping of genome
Computer Research and Modeling, 2010, v. 2, no. 4, pp. 419-428Views (last year): 2. Citations: 2 (RSCI).Recently we have developed a new method for studying DNA based on ultrasound - induced cleavage of DNA sugar-phosphate backbone. Relative cleavage rates of the phosphodiester bonds in all 16 dinucleotides have been determined. The increased amount of data sampling (of more than 20 000 nucleotides) made it also possible to obtain cleavage rates in all 256 possible tetranucleotides. These values quantitatively characterize sequence effects on conformational dynamics of DNA sugar phosphate backbone. Same type of DNA heterogeneity have been discovered and studied using its chemical cleavage induced by various chemical agents and DNAse I. The presence of essential heterogeneity in structural properties of DNA might be a key for physical mapping of the genomes, i.e. determining the structural profiles being responsible for DNA recognition by gene expression regulation machinery.
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Modeling of sedimentation and filtration layer formation by discrete element method
Computer Research and Modeling, 2012, v. 4, no. 1, pp. 105-120Views (last year): 1. Citations: 2 (RSCI).The numerical model of sedimentation and suspension filtration is proposed in this paper. The model is based on dynamic variant of discrete element method. This model represents the particles behavior on microand meso-scales: pores, arches, flocks formation. In addition, the proposed model qualitatively reproduces macro phenomenon: sedimentation of particle layer, slow shrinkage of the layer, sealing of the layer under its own weight of the particles and the external applied force.
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Numerical solution of a two-dimensional quasi-static problem of thermoplasticity: residual thermal stress calculation for a multipass welding of heterogeneous steels
Computer Research and Modeling, 2012, v. 4, no. 2, pp. 345-356Views (last year): 4. Citations: 6 (RSCI).A two-dimensional mathematical model was developed for estimating the stresses in welded joints formed during multipass welding of multilayer steels. The basis of the model is the system of equations that includes the Lagrange variational equation of incremental plasticity theory and the variational equation of heat conduction, which expresses the principle of M. Biot. Variational-difference method was used to solve the problems of heat conductivity and calculation of the transient temperature field, and then at each time step – for the quasi-static problem of thermoplasticity. The numerical scheme is based on triangular meshes, which gives a more accuracy in describing the boundaries of structural elements as compared to rectangular grids.
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On the investigation of plasma turbulence by the analysis of the spectra
Computer Research and Modeling, 2012, v. 4, no. 4, pp. 793-802Views (last year): 2. Citations: 4 (RSCI).The article describes the examples of the analysis of the experimental data spectra for identifying typical structures of processes forming plasma turbulence. The method is based on the original algorithm which is close to the one-sample bootstrap. The base model for description of the fine structure of stochastic processes is finite local-scale normal mixtures. For finding the statistical estimates (maximum likelihood estimates) well known EM algorithm is used. The efficiency of the proposed research technique is demonstrated for a number of spectra’s set obtained in different modes of low-frequency plasma turbulence.
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Simulation of copper nanocrystal plastic deformation at uniaxial tension
Computer Research and Modeling, 2013, v. 5, no. 2, pp. 225-230Views (last year): 3. Citations: 1 (RSCI).Computer simulation of plastic deformation of FCC copper nanocrystal in the process of uniaxial tension in a direction [001] is performed by methods of molecular dynamics and a static relaxation. It is shown that thermoelastic martensite transformation is responsible for plastic deformation, FCC lattice is reconstructed into HCP lattice. Orientation relationship of contacting phases is identified.
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Development of simulation optimization model for support of planning processes of warehouse systems
Computer Research and Modeling, 2014, v. 6, no. 2, pp. 295-307Views (last year): 2. Citations: 3 (RSCI).In the article, the questions of application of a optimization method for support of planning processes in warehouse systems by means of simulation are considered. Mechanisms of interrelation of optimization and simulation models are investigated, and also the algorithm of simulation optimization model development of warehouse system for support of planning processes is described in detail.
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On a possible approach to a sport game with continuous time simulation
Computer Research and Modeling, 2014, v. 6, no. 3, pp. 455-460Views (last year): 3. Citations: 2 (RSCI).This paper is dedicated to discussing methods of statistical modeling the outcomes of sport events and, particularly, matches with continuous time. We propose a simulation-based approach to predicting the outcome of a match, somehow medium between pure statistical methods and agent simulation of individual players. An example of retrospective prediction is given.
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Calculation of spatial distribution of differently oriented LEDs
Computer Research and Modeling, 2014, v. 6, no. 4, pp. 577-584Views (last year): 3. Citations: 2 (RSCI).New method for calculation of spatial light distribution of differently oriented LEDs is proposed. The main idea is combination of coordinate systems associated with these light sources. Unlike other conventional approaches, this method can be applied to the emitters with light distribution with arbitrary symmetry or without symmetry at all.
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R/S method application in neurological speech disorders analyses
Computer Research and Modeling, 2014, v. 6, no. 5, pp. 775-791Views (last year): 2. Citations: 2 (RSCI).Based on modified rescaled range scale computation algorithm, the technique of Hurst exponent and its characteristic time estimation is proposed. The approach of increase the accuracy and simplification automatic Hurst exponent calculation is developed. The Hurst exponent and characteristic time is calculated for power time sets of speech signals with various motor pathologies (aphasias and dysarthrias). Results is statistically analyzed, the correlation between Hurst exponent and characteristic time is estimated.
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The analysis of various design methods for production of housing parts by combined extrusion
Computer Research and Modeling, 2014, v. 6, no. 6, pp. 967-974Views (last year): 3. Citations: 7 (RSCI).The article contains review of various estimation methods of combined extrusion process for the representative part, also analytical calculations and numerical simulation of this process using program DEFORM 3D. The comparative analysis of the results obtained by different methods was made. The assumptions of the main factors having a significant effect on the reliability of the results were formulated.
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International Interdisciplinary Conference "Mathematics. Computing. Education"




