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Development of anisotropic nonlinear noise-reduction algorithm for computed tomography data with context dynamic threshold
Computer Research and Modeling, 2019, v. 11, no. 2, pp. 233-248Views (last year): 21.The article deals with the development of the noise-reduction algorithm based on anisotropic nonlinear data filtering of computed tomography (CT). Analysis of domestic and foreign literature has shown that the most effective algorithms for noise reduction of CT data use complex methods for analyzing and processing data, such as bilateral, adaptive, three-dimensional and other types of filtrations. However, a combination of such techniques is rarely used in practice due to long processing time per slice. In this regard, it was decided to develop an efficient and fast algorithm for noise-reduction based on simplified bilateral filtration method with three-dimensional data accumulation. The algorithm was developed on C ++11 programming language in Microsoft Visual Studio 2015. The main difference of the developed noise reduction algorithm is the use an improved mathematical model of CT noise, based on the distribution of Poisson and Gauss from the logarithmic value, developed earlier by our team. This allows a more accurate determination of the noise level and, thus, the threshold of data processing. As the result of the noise reduction algorithm, processed CT data with lower noise level were obtained. Visual evaluation of the data showed the increased information content of the processed data, compared to original data, the clarity of the mapping of homogeneous regions, and a significant reduction in noise in processing areas. Assessing the numerical results of the algorithm showed a decrease in the standard deviation (SD) level by more than 6 times in the processed areas, and high rates of the determination coefficient showed that the data were not distorted and changed only due to the removal of noise. Usage of newly developed context dynamic threshold made it possible to decrease SD level on every area of data. The main difference of the developed threshold is its simplicity and speed, achieved by preliminary estimation of the data array and derivation of the threshold values that are put in correspondence with each pixel of the CT. The principle of its work is based on threshold criteria, which fits well both into the developed noise reduction algorithm based on anisotropic nonlinear filtration, and another algorithm of noise-reduction. The algorithm successfully functions as part of the MultiVox workstation and is being prepared for implementation in a single radiological network of the city of Moscow.
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Investigation of Turing structures formation under the influence of wave instability
Computer Research and Modeling, 2019, v. 11, no. 3, pp. 397-412Views (last year): 21.A classical for nonlinear dynamics model, Brusselator, is considered, being augmented by addition of a third variable, which plays the role of a fast-diffusing inhibitor. The model is investigated in one-dimensional case in the parametric domain, where two types of diffusive instabilities of system’s homogeneous stationary state are manifested: wave instability, which leads to spontaneous formation of autowaves, and Turing instability, which leads to spontaneous formation of stationary dissipative structures, or Turing structures. It is shown that, due to the subcritical nature of Turing bifurcation, the interaction of two instabilities in this system results in spontaneous formation of stationary dissipative structures already before the passage of Turing bifurcation. In response to different perturbations of spatially uniform stationary state, different stable regimes are manifested in the vicinity of the double bifurcation point in the parametric region under study: both pure regimes, which consist of either stationary or autowave dissipative structures; and mixed regimes, in which different modes dominate in different areas of the computational space. In the considered region of the parametric space, the system is multistable and exhibits high sensitivity to initial noise conditions, which leads to blurring of the boundaries between qualitatively different regimes in the parametric region. At that, even in the area of dominance of mixed modes with prevalence of Turing structures, the establishment of a pure autowave regime has significant probability. In the case of stable mixed regimes, a sufficiently strong local perturbation in the area of the computational space, where autowave mode is manifested, can initiate local formation of new stationary dissipative structures. Local perturbation of the stationary homogeneous state in the parametric region under investidation leads to a qualitatively similar map of established modes, the zone of dominance of pure autowave regimes being expanded with the increase of local perturbation amplitude. In two-dimensional case, mixed regimes turn out to be only transient — upon the appearance of localized Turing structures under the influence of wave regime, they eventually occupy all available space.
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Hierarchical method for mathematical modeling of stochastic thermal processes in complex electronic systems
Computer Research and Modeling, 2019, v. 11, no. 4, pp. 613-630Views (last year): 3.A hierarchical method of mathematical and computer modeling of interval-stochastic thermal processes in complex electronic systems for various purposes is developed. The developed concept of hierarchical structuring reflects both the constructive hierarchy of a complex electronic system and the hierarchy of mathematical models of heat exchange processes. Thermal processes that take into account various physical phenomena in complex electronic systems are described by systems of stochastic, unsteady, and nonlinear partial differential equations and, therefore, their computer simulation encounters considerable computational difficulties even with the use of supercomputers. The hierarchical method avoids these difficulties. The hierarchical structure of the electronic system design, in general, is characterized by five levels: Level 1 — the active elements of the ES (microcircuits, electro-radio-elements); Level 2 — electronic module; Level 3 — a panel that combines a variety of electronic modules; Level 4 — a block of panels; Level 5 — stand installed in a stationary or mobile room. The hierarchy of models and modeling of stochastic thermal processes is constructed in the reverse order of the hierarchical structure of the electronic system design, while the modeling of interval-stochastic thermal processes is carried out by obtaining equations for statistical measures. The hierarchical method developed in the article allows to take into account the principal features of thermal processes, such as the stochastic nature of thermal, electrical and design factors in the production, assembly and installation of electronic systems, stochastic scatter of operating conditions and the environment, non-linear temperature dependencies of heat exchange factors, unsteady nature of thermal processes. The equations obtained in the article for statistical measures of stochastic thermal processes are a system of 14 non-stationary nonlinear differential equations of the first order in ordinary derivatives, whose solution is easily implemented on modern computers by existing numerical methods. The results of applying the method for computer simulation of stochastic thermal processes in electron systems are considered. The hierarchical method is applied in practice for the thermal design of real electronic systems and the creation of modern competitive devices.
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Application of the grid-characteristic method for mathematical modeling in dynamical problems of deformable solid mechanics
Computer Research and Modeling, 2019, v. 11, no. 6, pp. 1041-1048 -
A numerical method for solving two-dimensional convection equation based on the monotonized Z-scheme for Earth ionosphere simulation
Computer Research and Modeling, 2020, v. 12, no. 1, pp. 43-58The purpose of the paper is a research of a 2nd order finite difference scheme based on the Z-scheme. This research is the numerical solution of several two-dimensional differential equations simulated the incompressible medium convection.
One of real tasks for similar equations solution is the numerical simulating of strongly non-stationary midscale processes in the Earth ionosphere. Because convection processes in ionospheric plasma are controlled by magnetic field, the plasma incompressibility condition is supposed across the magnetic field. For the same reason, there can be rather high velocities of heat and mass convection along the magnetic field.
Ionospheric simulation relevant task is the research of plasma instability of various scales which started in polar and equatorial regions first of all. At the same time the mid-scale irregularities having characteristic sizes 1–50 km create conditions for development of the small-scale instabilities. The last lead to the F-spread phenomenon which significantly influences the accuracy of positioning satellite systems work and also other space and ground-based radio-electronic systems.
The difference schemes used for simultaneous simulating of such multi-scale processes must to have high resolution. Besides, these difference schemes must to be high resolution on the one hand and monotonic on the other hand. The fact that instabilities strengthen errors of difference schemes, especially they strengthen errors of dispersion type is the reason of such contradictory requirements. The similar swing of errors usually results to nonphysical results at the numerical solution.
At the numerical solution of three-dimensional mathematical models of ionospheric plasma are used the following scheme of splitting on physical processes: the first step of splitting carries out convection along, the second step of splitting carries out convection across. The 2nd order finite difference scheme investigated in the paper solves approximately convection across equations. This scheme is constructed by a monotonized nonlinear procedure on base of the Z-scheme which is one of 2nd order schemes. At this monotonized procedure a nonlinear correction with so-called “oblique differences” is used. “Oblique differences” contain the grid nodes relating to different layers of time.
The researches were conducted for two cases. In the simulating field components of the convection vector had: 1) the constant sign; 2) the variable sign. Dissipative and dispersive characteristics of the scheme for different types of the limiting functions are in number received.
The results of the numerical experiments allow to draw the following conclusions.
1. For the discontinuous initial profile the best properties were shown by the SuperBee limiter.
2. For the continuous initial profile with the big spatial steps the SuperBee limiter is better, and at the small steps the Koren limiter is better.
3. For the smooth initial profile the best results were shown by the Koren limiter.
4. The smooth F limiter showed the results similar to Koren limiter.
5. Limiters of different type leave dispersive errors, at the same time dependences of dispersive errors on the scheme parameters have big variability and depend on the scheme parameters difficulty.
6. The monotony of the considered differential scheme is in number confirmed in all calculations. The property of variation non-increase for all specified functions limiters is in number confirmed for the onedimensional equation.
7. The constructed differential scheme at the steps on time which are not exceeding the Courant's step is monotonous and shows good exactness characteristics for different types solutions. At excess of the Courant's step the scheme remains steady, but becomes unsuitable for instability problems as monotony conditions not satisfied in this case.
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Physical research, numerical and analytical modeling of explosion phenomena. A review
Computer Research and Modeling, 2020, v. 12, no. 3, pp. 505-546The review considers a wide range of phenomena and problems associated with the explosion. Detailed numerical studies revealed an interesting physical effect — the formation of discrete vortex structures directly behind the front of a shock wave propagating in dense layers of a heterogeneous atmosphere. The necessity of further investigation of such phenomena and the determination of the degree of their connection with the possible development of gas-dynamic instability is shown. The brief analysis of numerous works on the thermal explosion of meteoroids during their high-speed movement in the Earth’s atmosphere is given. Much attention is paid to the development of a numerical algorithm for calculating the simultaneous explosion of several fragments of meteoroids and the features of the development of such a gas-dynamic flow are analyzed. The work shows that earlier developed algorithms for calculating explosions can be successfully used to study explosive volcanic eruptions. The paper presents and discusses the results of such studies for both continental and underwater volcanoes with certain restrictions on the conditions of volcanic activity.
The mathematical analysis is performed and the results of analytical studies of a number of important physical phenomena characteristic of explosions of high specific energy in the ionosphere are presented. It is shown that the preliminary laboratory physical modeling of the main processes that determine these phenomena is of fundamental importance for the development of sufficiently complete and adequate theoretical and numerical models of such complex phenomena as powerful plasma disturbances in the ionosphere. Laser plasma is the closest object for such a simulation. The results of the corresponding theoretical and experimental studies are presented and their scientific and practical significance is shown. The brief review of recent years on the use of laser radiation for laboratory physical modeling of the effects of a nuclear explosion on asteroid materials is given.
As a result of the analysis performed in the review, it was possible to separate and preliminarily formulate some interesting and scientifically significant questions that must be investigated on the basis of the ideas already obtained. These are finely dispersed chemically active systems formed during the release of volcanoes; small-scale vortex structures; generation of spontaneous magnetic fields due to the development of instabilities and their role in the transformation of plasma energy during its expansion in the ionosphere. It is also important to study a possible laboratory physical simulation of the thermal explosion of bodies under the influence of highspeed plasma flow, which has only theoretical interpretations.
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Calibration of model parameters for calculating correspondence matrix for Moscow
Computer Research and Modeling, 2020, v. 12, no. 5, pp. 961-978In this paper, we consider the problem of restoring the correspondence matrix based on the observations of real correspondences in Moscow. Following the conventional approach [Gasnikov et al., 2013], the transport network is considered as a directed graph whose edges correspond to road sections and the graph vertices correspond to areas that the traffic participants leave or enter. The number of city residents is considered constant. The problem of restoring the correspondence matrix is to calculate all the correspondence from the $i$ area to the $j$ area.
To restore the matrix, we propose to use one of the most popular methods of calculating the correspondence matrix in urban studies — the entropy model. In our work, which is based on the work [Wilson, 1978], we describe the evolutionary justification of the entropy model and the main idea of the transition to solving the problem of entropy-linear programming (ELP) in calculating the correspondence matrix. To solve the ELP problem, it is proposed to pass to the dual problem. In this paper, we describe several numerical optimization methods for solving this problem: the Sinkhorn method and the Accelerated Sinkhorn method. We provide numerical experiments for the following variants of cost functions: a linear cost function and a superposition of the power and logarithmic cost functions. In these functions, the cost is a combination of average time and distance between areas, which depends on the parameters. The correspondence matrix is calculated for multiple sets of parameters and then we calculate the quality of the restored matrix relative to the known correspondence matrix.
We assume that the noise in the restored correspondence matrix is Gaussian, as a result, we use the standard deviation as a quality metric. The article provides an overview of gradient-free optimization methods for solving non-convex problems. Since the number of parameters of the cost function is small, we use the grid search method to find the optimal parameters of the cost function. Thus, the correspondence matrix calculated for each set of parameters and then the quality of the restored matrix is evaluated relative to the known correspondence matrix. Further, according to the minimum residual value for each cost function, we determine for which cost function and at what parameter values the restored matrix best describes real correspondence.
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Multidimensional nodal method of characteristics for hyperbolic systems
Computer Research and Modeling, 2021, v. 13, no. 1, pp. 19-32Disclosed is a multidimensional nodal method of characteristics, designed to integrate hyperbolic systems, based on splitting the initial system of equations into a number of one-dimensional subsystems, for which a onedimensional nodal method of characteristics is used. Calculation formulas are given, the calculation method is described in detail in relation to a single-speed model of a heterogeneous medium in the presence of gravity forces. The presented method is applicable to other hyperbolic systems of equations. Using this explicit, nonconservative, first-order accuracy of the method, a number of test tasks are calculated and it is shown that in the framework of the proposed approach, by attracting additional points in the circuit template, it is possible to carry out calculations with Courant numbers exceeding one. So, in the calculation of the flow of the threedimensional step by the flow of a heterogeneous mixture, the Courant number was 1.2. If Godunov’s method is used to solve the same problem, the maximum number of Courant, at which a stable account is possible, is 0.13 × 10-2. Another feature of the multidimensional method of characteristics is the weak dependence of the time step on the dimension of the problem, which significantly expands the possibilities of this approach. Using this method, a number of problems were calculated that were previously considered “heavy” for the numerical methods of Godunov, Courant – Isaacson – Rees, which is due to the fact that it most fully uses the advantages of the characteristic representation of the system of equations.
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Neural network analysis of transportation flows of urban aglomeration using the data from public video cameras
Computer Research and Modeling, 2021, v. 13, no. 2, pp. 305-318Correct modeling of complex dynamics of urban transportation flows requires the collection of large volumes of empirical data to specify types of the modes and their identification. At the same time, setting a large number of observation posts is expensive and technically not always feasible. All this results in insufficient factographic support for the traffic control systems as well as for urban planners with the obvious consequences for the quality of their decisions. As one of the means to provide large-scale data collection at least for the qualitative situation analysis, the wide-area video cameras are used in different situation centers. There they are analyzed by human operators who are responsible for observation and control. Some video cameras provided their videos for common access, which makes them a valuable resource for transportation studies. However, there are significant problems with getting qualitative data from such cameras, which relate to the theory and practice of image processing. This study is devoted to the practical application of certain mainstream neuro-networking technologies for the estimation of essential characteristics of actual transportation flows. The problems arising in processing these data are analyzed, and their solutions are suggested. The convolution neural networks are used for tracking, and the methods for obtaining basic parameters of transportation flows from these observations are studied. The simplified neural networks are used for the preparation of training sets for the deep learning neural network YOLOv4 which is later used for the estimation of speed and density of automobile flows.
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On the stability of the gravitational system of many bodies
Computer Research and Modeling, 2021, v. 13, no. 3, pp. 487-511In this paper, a gravitational system is understood as a set of point bodies that interact according to Newton's law of attraction and have a negative value of the total energy. The question of the stability (nonstability) of a gravitational system of general position is discussed by direct computational experiment. A gravitational system of general position is a system in which the masses, initial positions, and velocities of bodies are chosen randomly from given ranges. A new method for the numerical solution of ordinary differential equations at large time intervals has been developed for the computational experiment. The proposed method allowed, on the one hand, to ensure the fulfillment of all conservation laws by a suitable correction of solutions, on the other hand, to use standard methods for the numerical solution of systems of differential equations of low approximation order. Within the framework of this method, the trajectory of a gravitational system in phase space is assembled from parts, the duration of each of which can be macroscopic. The constructed trajectory, generally speaking, is discontinuous, and the points of joining of individual pieces of the trajectory act as branch points. In connection with the latter circumstance, the proposed method, in part, can be attributed to the class of Monte Carlo methods. The general conclusion of a series of computational experiments has shown that gravitational systems of general position with a number of bodies of 3 or more, generally speaking, are unstable. In the framework of the proposed method, special cases of zero-equal angular momentum of a gravitational system with a number of bodies of 3 or more, as well as the problem of motion of two bodies, are specially considered. The case of numerical modeling of the dynamics of the solar system in time is considered separately. From the standpoint of computational experiments based on analytical methods, as well as direct numerical methods of high-order approximation (10 and higher), the stability of the solar system was previously demonstrated at an interval of five billion years or more. Due to the limitations on the available computational resources, the stability of the dynamics of the planets of the solar system within the framework of the proposed method was confirmed for a period of ten million years. With the help of a computational experiment, one of the possible scenarios for the disintegration of the solar systems is also considered.
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