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Dissipative Stochastic Dynamic Model of Language Signs Evolution
Computer Research and Modeling, 2011, v. 3, no. 2, pp. 103-124Views (last year): 1. Citations: 6 (RSCI).We offer the dissipative stochastic dynamic model of the language sign evolution, satisfying to the principle of the least action, one of fundamental variational principles of the Nature. The model conjectures the Poisson nature of the birth flow of language signs and the exponential distribution of their associative-semantic potential (ASP). The model works with stochastic difference equations of the special type for dissipative processes. The equation for momentary polysemy distribution and frequency-rank distribution drawn from our model do not differs significantly (by Kolmogorov-Smirnov’s test) from empirical distributions, got from main Russian and English explanatory dictionaries as well as frequency dictionaries of them.
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On the stochastic gradient descent matrix factorization in application to the supervised classification of microarrays
Computer Research and Modeling, 2013, v. 5, no. 2, pp. 131-140Citations: 4 (RSCI).Microarray datasets are highly dimensional, with a small number of collected samples in comparison to thousands of features. This poses a significant challenge that affects the interpretation, applicability and validation of the analytical results. Matrix factorizations have proven to be a useful method for describing data in terms of a small number of meta-features, which reduces noise, while still capturing the essential features of the data. Three novel and mutually relevant methods are presented in this paper: 1) gradient-based matrix factorization with two adaptive learning rates (in accordance with the number of factor matrices) and their automatic updates; 2) nonparametric criterion for the selection of the number of factors; and 3) nonnegative version of the gradient-based matrix factorization which doesn't require any extra computational costs in difference to the existing methods. We demonstrate effectiveness of the proposed methods to the supervised classification of gene expression data.
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On some stochastic mirror descent methods for constrained online optimization problems
Computer Research and Modeling, 2019, v. 11, no. 2, pp. 205-217Views (last year): 42.The problem of online convex optimization naturally occurs in cases when there is an update of statistical information. The mirror descent method is well known for non-smooth optimization problems. Mirror descent is an extension of the subgradient method for solving non-smooth convex optimization problems in the case of a non-Euclidean distance. This paper is devoted to a stochastic variant of recently proposed Mirror Descent methods for convex online optimization problems with convex Lipschitz (generally, non-smooth) functional constraints. This means that we can still use the value of the functional constraint, but instead of (sub)gradient of the objective functional and the functional constraint, we use their stochastic (sub)gradients. More precisely, assume that on a closed subset of $n$-dimensional vector space, $N$ convex Lipschitz non-smooth functionals are given. The problem is to minimize the arithmetic mean of these functionals with a convex Lipschitz constraint. Two methods are proposed, for solving this problem, using stochastic (sub)gradients: adaptive method (does not require knowledge of Lipschitz constant neither for the objective functional, nor for the functional of constraint) and non-adaptivemethod (requires knowledge of Lipschitz constant for the objective functional and the functional of constraint). Note that it is allowed to calculate the stochastic (sub)gradient of each functional only once. In the case of non-negative regret, we find that the number of non-productive steps is $O$($N$), which indicates the optimality of the proposed methods. We consider an arbitrary proximal structure, which is essential for decisionmaking problems. The results of numerical experiments are presented, allowing to compare the work of adaptive and non-adaptive methods for some examples. It is shown that the adaptive method can significantly improve the number of the found solutions.
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Stable character of the Rice statistical distribution: the theory and application in the tasks of the signals’ phase shift measuring
Computer Research and Modeling, 2020, v. 12, no. 3, pp. 475-485The paper concerns the study of the Rice statistical distribution’s peculiarities which cause the possibility of its efficient application in solving the tasks of high precision phase measuring in optics. The strict mathematical proof of the Rician distribution’s stable character is provided in the example of the differential signal consideration, namely: it has been proved that the sum or the difference of two Rician signals also obey the Rice distribution. Besides, the formulas have been obtained for the parameters of the resulting summand or differential signal’s Rice distribution. Based upon the proved stable character of the Rice distribution a new original technique of the high precision measuring of the two quasi-harmonic signals’ phase shift has been elaborated in the paper. This technique is grounded in the statistical analysis of the measured sampled data for the amplitudes of the both signals and for the amplitude of the third signal which is equal to the difference of the two signals to be compared in phase. The sought-for phase shift of two quasi-harmonic signals is being calculated from the geometrical considerations as an angle of a triangle which sides are equal to the three indicated signals’ amplitude values having been reconstructed against the noise background. Thereby, the proposed technique of measuring the phase shift using the differential signal analysis, is based upon the amplitude measurements only, what significantly decreases the demands to the equipment and simplifies the technique implementation in practice. The paper provides both the strict mathematical substantiation of a new phase shift measuring technique and the results of its numerical testing. The elaborated method of high precision phase measurements may be efficiently applied for solving a wide circle of tasks in various areas of science and technology, in particular — at distance measuring, in communication systems, in navigation, etc.
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The error accumulation in the conjugate gradient method for degenerate problem
Computer Research and Modeling, 2021, v. 13, no. 3, pp. 459-472In this paper, we consider the conjugate gradient method for solving the problem of minimizing a quadratic function with additive noise in the gradient. Three concepts of noise were considered: antagonistic noise in the linear term, stochastic noise in the linear term and noise in the quadratic term, as well as combinations of the first and second with the last. It was experimentally obtained that error accumulation is absent for any of the considered concepts, which differs from the folklore opinion that, as in accelerated methods, error accumulation must take place. The paper gives motivation for why the error may not accumulate. The dependence of the solution error both on the magnitude (scale) of the noise and on the size of the solution using the conjugate gradient method was also experimentally investigated. Hypotheses about the dependence of the error in the solution on the noise scale and the size (2-norm) of the solution are proposed and tested for all the concepts considered. It turned out that the error in the solution (by function) linearly depends on the noise scale. The work contains graphs illustrating each individual study, as well as a detailed description of numerical experiments, which includes an account of the methods of noise of both the vector and the matrix.
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Denoising fluorescent imaging data with two-step truncated HOSVD
Computer Research and Modeling, 2025, v. 17, no. 4, pp. 529-542Fluorescent imaging data are currently widely used in neuroscience and other fields. Genetically encoded sensors, based on fluorescent proteins, provide a wide inventory enabling scientiests to image virtually any process in a living cell and extracellular environment. However, especially due to the need for fast scanning, miniaturization, etc, the imaging data can be severly corrupred with multiplicative heteroscedactic noise, reflecting stochastic nature of photon emission and photomultiplier detectors. Deep learning architectures demonstrate outstanding performance in image segmentation and denoising, however they can require large clean datasets for training, and the actual data transformation is not evident from the network architecture and weight composition. On the other hand, some classical data transforms can provide for similar performance in combination with more clear insight in why and how it works. Here we propose an algorithm for denoising fluorescent dynamical imaging data, which is based on multilinear higher-order singular value decomposition (HOSVD) with optional truncation in rank along each axis and thresholding of the tensor of decomposition coefficients. In parallel, we propose a convenient paradigm for validation of the algorithm performance, based on simulated flurescent data, resulting from biophysical modeling of calcium dynamics in spatially resolved realistic 3D astrocyte templates. This paradigm is convenient in that it allows to vary noise level and its resemblance of the Gaussian noise and that it provides ground truth fluorescent signal that can be used to validate denoising algorithms. The proposed denoising method employs truncated HOSVD twice: first, narrow 3D patches, spanning the whole recording, are processed (local 3D-HOSVD stage), second, 4D groups of 3D patches are collaboratively processed (non-local, 4D-HOSVD stage). The effect of the first pass is twofold: first, a significant part of noise is removed at this stage, second, noise distribution is transformed to be more Gaussian-like due to linear combination of multiple samples in the singular vectors. The effect of the second stage is to further improve SNR. We perform parameter tuning of the second stage to find optimal parameter combination for denoising.
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A general approach to constructing gradient methods for parameter identification based on modified weighted Gram – Schmidt orthogonalization and information-type discrete filtering algorithms
Computer Research and Modeling, 2025, v. 17, no. 5, pp. 761-782The paper considers the problem of parameter identification of discrete-time linear stochastic systems in the state space with additive and multiplicative noise. It is assumed that the state and measurements equations of a discrete-time linear stochastic system depend on an unknown parameter to be identified.
A new approach to the construction of gradient parameter identification methods in the class of discrete-time linear stochastic systems with additive and multiplicative noise is presented, based on the application of modified weighted Gram – Schmidt orthogonalization (MWGS) and the discrete-time information-type filtering algorithms.
The main theoretical results of this research include: 1) a new identification criterion in terms of an extended information filter; 2) a new algorithm for calculating derivatives with respect to an uncertainty parameter in a discrete-time linear stochastic system based on an extended information LD filter using the direct procedure of modified weighted Gram – Schmidt orthogonalization; and 3) a new method for calculating the gradient of identification criteria using a “differentiated” extended information LD filter.
The advantages of this approach are that it uses MWGS orthogonalization which is numerically stable against machine roundoff errors, and it forms the basis of all the developed methods and algorithms. The information LD-filter maintains the symmetry and positive definiteness of the information matrices. The algorithms have an array structure that is convenient for computer implementation.
All the developed algorithms were implemented in MATLAB. A series of numerical experiments were carried out. The results obtained demonstrated the operability of the proposed approach, using the example of solving the problem of parameter identification for a mathematical model of a complex mechanical system.
The results can be used to develop methods for identifying parameters in mathematical models that are represented in state space by discrete-time linear stochastic systems with additive and multiplicative noise.
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Probabilistic aspects of “computer analogy” method for solving differential equations
Computer Research and Modeling, 2009, v. 1, no. 1, pp. 21-31Views (last year): 3. Citations: 1 (RSCI).Method which allows to obtain explicit form of the solution as a part of power series of the argument step is developed. Formalization of characteristics of the algorithm analogous to operations of a computer is performed. The operation of transfer from one rank to another leads to a probability scheme of the algorithm that averages unknown intermediate steps in higher ranks of the series. The stochastic characteristics of the method are studied and illustrated. Examples of solving nonlinear equations and systems of nonlinear differential equations are presented.
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Statistical distribution of the quasi-harmonic signal’s phase: basics of theory and computer simulation
Computer Research and Modeling, 2024, v. 16, no. 2, pp. 287-297The paper presents the results of the fundamental research directed on the theoretical study and computer simulation of peculiarities of the quasi-harmonic signal’s phase statistical distribution. The quasi-harmonic signal is known to be formed as a result of the Gaussian noise impact on the initially harmonic signal. By means of the mathematical analysis the formulas have been obtained in explicit form for the principle characteristics of this distribution, namely: for the cumulative distribution function, the probability density function, the likelihood function. As a result of the conducted computer simulation the dependencies of these functions on the phase distribution parameters have been analyzed. The paper elaborates the methods of estimating the phase distribution parameters which contain the information about the initial, undistorted signal. It has been substantiated that the task of estimating the initial value of the phase of quasi-harmonic signal can be efficiently solved by averaging the results of the sampled measurements. As for solving the task of estimating the second parameter of the phase distribution, namely — the parameter, determining the signal level respectively the noise level — a maximum likelihood technique is proposed to be applied. The graphical illustrations are presented that have been obtained by means of the computer simulation of the principle characteristics of the phase distribution under the study. The existence and uniqueness of the likelihood function’s maximum allow substantiating the possibility and the efficiency of solving the task of estimating signal’s level relative to noise level by means of the maximum likelihood technique. The elaborated method of estimating the un-noised signal’s level relative to noise, i. e. the parameter characterizing the signal’s intensity on the basis of measurements of the signal’s phase is an original and principally new technique which opens perspectives of usage of the phase measurements as a tool of the stochastic data analysis. The presented investigation is meaningful for solving the task of determining the phase and the signal’s level by means of the statistical processing of the sampled phase measurements. The proposed methods of the estimation of the phase distribution’s parameters can be used at solving various scientific and technological tasks, in particular, in such areas as radio-physics, optics, radiolocation, radio-navigation, metrology.
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Hierarchical method for mathematical modeling of stochastic thermal processes in complex electronic systems
Computer Research and Modeling, 2019, v. 11, no. 4, pp. 613-630Views (last year): 3.A hierarchical method of mathematical and computer modeling of interval-stochastic thermal processes in complex electronic systems for various purposes is developed. The developed concept of hierarchical structuring reflects both the constructive hierarchy of a complex electronic system and the hierarchy of mathematical models of heat exchange processes. Thermal processes that take into account various physical phenomena in complex electronic systems are described by systems of stochastic, unsteady, and nonlinear partial differential equations and, therefore, their computer simulation encounters considerable computational difficulties even with the use of supercomputers. The hierarchical method avoids these difficulties. The hierarchical structure of the electronic system design, in general, is characterized by five levels: Level 1 — the active elements of the ES (microcircuits, electro-radio-elements); Level 2 — electronic module; Level 3 — a panel that combines a variety of electronic modules; Level 4 — a block of panels; Level 5 — stand installed in a stationary or mobile room. The hierarchy of models and modeling of stochastic thermal processes is constructed in the reverse order of the hierarchical structure of the electronic system design, while the modeling of interval-stochastic thermal processes is carried out by obtaining equations for statistical measures. The hierarchical method developed in the article allows to take into account the principal features of thermal processes, such as the stochastic nature of thermal, electrical and design factors in the production, assembly and installation of electronic systems, stochastic scatter of operating conditions and the environment, non-linear temperature dependencies of heat exchange factors, unsteady nature of thermal processes. The equations obtained in the article for statistical measures of stochastic thermal processes are a system of 14 non-stationary nonlinear differential equations of the first order in ordinary derivatives, whose solution is easily implemented on modern computers by existing numerical methods. The results of applying the method for computer simulation of stochastic thermal processes in electron systems are considered. The hierarchical method is applied in practice for the thermal design of real electronic systems and the creation of modern competitive devices.
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