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Modern GPUs are massively-parallel processors, offering substantial amount of computational power in energy-efficient package. We discuss the benefits of utilizing this computing power for modeling problems in bio-informatics, such as molecular dynamics, quantum chemistry and sequence analysis.

Pattern formation described by the scalar Fisher–Kolmogorov–Petrovsky–Piscounov equation with nonlocal competition loses and convection linear on coordinates is considered numerically. Initial function localized around a point is shown to transform in a function localized around a ring with symmetrically sited local maxima. The ring radius and number of maxima depend on convection.

Mathematical model of non-stationary ventilation processes of coal mining is presented. Numerical simulation of dead-end excavation ventilation processes using local ventilation fan and occurred non-stationary aerodynamic processes by reversing main ventilation fan in modeling of coal mining are presented in this study Poisson on circle and other areas.

The paper presents a mathematical model to be used for design of cooling tanks for vapor desublimation. Results of calculations for the process of cooling of two tanks in a block of four are presented. Chart of the cooling air flow in the piping network is presented.

This paper covers deployable systems assembled from a set of trapezium plates. The middles lines of the plates represent a plane curve in the original position of the package. It is proved that when the package of thin plates is unwrapped, a surface approximating a shell of nearly any curvature is formed. Kinematics of the continual model is analyzed by the method of Cartan moving hedron, extending the results the authors published earlier. Various applications of rotating shells are shown. Experimental models of deployable latticed systems are demonstrated.

The solution of problems of heat conductivity by means of a method of continuous asynchronous cellular automats is considered in the article. Coordination of distribution of temperature in a sample at a given time between cellular automat model and the exact analytical solution of the equation of heattransfer is shown that speaks about expedient use of this method of modelling. Dependence between time of one cellular automatic interaction and dimension of a cellular automatic field is received.

Protein-protein interactions are of central importance for virtually every process in living matter. Modeling the dynamics of protein association is crucial for understanding their functionality. This paper proposes novel simulation software ProKSim (Protein Kinetics Simulator) for modeling of protein interactions by means of the multi-particle Brownian Dynamics. Effect of long-range electrostatic interactions on the process of transient encounter complex formation is numerically estimated. Investigation of transient encounter complex formation was performed for three pairs of proteins: ferredoxin and ferredoxin:NADP⁺-redustase, plastocyanin and cytochrome f, barnase and barstar.

We investigated numerically the dynamics of kinks of modified sine-Gordon equation in the model with localized spatial modulation of a periodic potential (or impurity). We considered the case of two identical impurities. We showed the possibility of collective effects of the influence of impurities, which are heavily dependent on the distance between them. We demonstrated the existence of a certain critical value of the distance between impurities, which has two qualitatively different scenarios of the dynamic behavior of kink.

Stochastically forced discrete dynamical systems are considered. Using first approximation systems, we study dynamics of deviations of stochastic solutions from deterministic equilibria. Necessary and sufficient conditions of the existence of stable stationary solutions of equations for mean-square deviations are derived. Stationary values of these mean-square deviations are used for the estimations of the dispersion of random states nearby stable equilibria and analysis of noise-induced transitions. Constructive application of the suggested technique to the analysis of various stochastic regimes in Ricker population model with Allee effect is demonstrated.

The models of liquid heptane and cyclohexane has been developed. The properties of model liquids appear to be in a good agreement with a properties of real liquids. X-Ray diffraction spectra of model liquids were also in a good agreement with experimental ones. Radial distribution functions analysis allows us to reveal a crucial molecular feature of cyclohexane. Isometric molecules of cyclohexane are packed more tightly and regular. Tight packing lead to the free volume deficiency, which could explain increased viscosity and melting temperature of cyclohexane.