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Effective rank of a problem of function estimation based on measurement with an error of finite number of its linear functionals
Computer Research and Modeling, 2014, v. 6, no. 2, pp. 189-202The problem of restoration of an element f of Euclidean functional space L2(X) based on the results of measurements of a finite set of its linear functionals, distorted by (random) error is solved. A priori data aren't assumed. Family of linear subspaces of the maximum (effective) dimension for which the projections of element f to them allow estimates with a given accuracy, is received. The effective rank ρ(δ) of the estimation problem is defined as the function equal to the maximum dimension of an orthogonal component Pf of the element f which can be estimated with a error, which is not surpassed the value δ. The example of restoration of a spectrum of radiation based on a finite set of experimental data is given.
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FlowVision: Industrial computational fluid dynamics
Computer Research and Modeling, 2017, v. 9, no. 1, pp. 5-20Views (last year): 30. Citations: 8 (RSCI).The work submits new release of the FlowVision software designed for automation of engineering calculations in computational fluid dynamics: FlowVision 3.09.05. The FlowVision software is used for solving different industrial problems. Its popularity is based on the capability to solve complex non-tradition problems involving different physical processes. The paradigm of complete automation of labor-intensive and time-taking processes like grid generation makes FlowVision attractive for many engineers. FlowVision is completely developer-independent software. It includes an advanced graphical interface, the system for specifying a computational project as well as the system for flow visualization on planes, on curvilinear surfaces and in volume by means of different methods: plots, color contours, iso-lines, iso-surfaces, vector fields. Besides that, FlowVision provides tools for calculation of integral characteristics on surfaces and in volumetric regions.
The software is based on the finite-volume approach to approximation of the partial differential equations describing fluid motion and accompanying physical processes. It provides explicit and implicit methods for time integration of these equations. The software includes automated generator of unstructured grid with capability of its local dynamic adaptation. The solver involves two-level parallelism which allows calculations on computers with distributed and shared memory (coexisting in the same hardware). FlowVision incorporates a wide spectrum of physical models: different turbulence models, models for mass transfer accounting for chemical reactions and radioactive decay, several combustion models, a dispersed phase model, an electro-hydrodynamic model, an original VOF model for tracking moving interfaces. It should be noted that turbulence can be simulated within URANS, LES, and ILES approaches. FlowVision simulates fluid motion with velocities corresponding to all possible flow regimes: from incompressible to hypersonic. This is achieved by using an original all-speed velocity-pressure split algorithm for integration of the Navier-Stokes equations.
FlowVision enables solving multi-physic problems with use of different modeling tools. For instance, one can simulate multi-phase flows with use of the VOF method, flows past bodies moving across a stationary grid (within Euler approach), flows in rotary machines with use of the technology of sliding grid. Besides that, the software solves fluid-structure interaction problems using the technology of two-way coupling of FlowVision with finite-element codes. Two examples of solving challenging problems in the FlowVision software are demonstrated in the given article. The first one is splashdown of a spacecraft after deceleration by means of jet engines. This problem is characterized by presence of moving bodies and contact surface between the air and the water in the computational domain. The supersonic jets interact with the air-water interphase. The second problem is simulation of the work of a human heart with artificial and natural valves designed on the basis of tomographic investigations with use of a finite-element model of the heart. This problem is characterized by two-way coupling between the “liquid” computational domain and the finite-element model of the hart muscles.
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Stationary states and bifurcations in a one-dimensional active medium of oscillators
Computer Research and Modeling, 2023, v. 15, no. 3, pp. 491-512This article presents the results of an analytical and computer study of the collective dynamic properties of a chain of self-oscillating systems (conditionally — oscillators). It is assumed that the couplings of individual elements of the chain are non-reciprocal, unidirectional. More precisely, it is assumed that each element of the chain is under the influence of the previous one, while the reverse reaction is absent (physically insignificant). This is the main feature of the chain. This system can be interpreted as an active discrete medium with unidirectional transfer, in particular, the transfer of a matter. Such chains can represent mathematical models of real systems having a lattice structure that occur in various fields of natural science and technology: physics, chemistry, biology, radio engineering, economics, etc. They can also represent models of technological and computational processes. Nonlinear self-oscillating systems (conditionally, oscillators) with a wide “spectrum” of potentially possible individual self-oscillations, from periodic to chaotic, were chosen as the “elements” of the lattice. This allows one to explore various dynamic modes of the chain from regular to chaotic, changing the parameters of the elements and not changing the nature of the elements themselves. The joint application of qualitative methods of the theory of dynamical systems and qualitative-numerical methods allows one to obtain a clear picture of all possible dynamic regimes of the chain. The conditions for the existence and stability of spatially-homogeneous dynamic regimes (deterministic and chaotic) of the chain are studied. The analytical results are illustrated by a numerical experiment. The dynamical regimes of the chain are studied under perturbations of parameters at its boundary. The possibility of controlling the dynamic regimes of the chain by turning on the necessary perturbation at the boundary is shown. Various cases of the dynamics of chains comprised of inhomogeneous (different in their parameters) elements are considered. The global chaotic synchronization (of all oscillators in the chain) is studied analytically and numerically.
Keywords: dynamical system, lattice, bifurcations, oscillator, phase space, dynamical chaos, synchronization. -
Calculation of radiation in shockwave layer of a space vehicle taking into account details of photon spectrum
Computer Research and Modeling, 2017, v. 9, no. 4, pp. 579-594Views (last year): 8. Citations: 1 (RSCI).Calculations of radiation transport in the shockwave layer of a descent space vehicle cause essential difficulties due to complex multi-resonance dependence of the absorption macroscopic cross sections from the photon energy. The convergence of two approximate spectrum averaging methods to the results of exact pointwise spectrum calculations is investigated. The first one is the well known multigroup method, the second one is the Lebesgue averaging method belonging to methods of the reduction of calculation points by means of aggregation of spectral points which are characterized by equal absorption strength. It is shown that convergence of the Lebesgue averaging method is significantly faster than the multigroup approach as the number of groups is increased. The only 100–150 Lebesgue groups are required to achieve the accuracy of pointwise calculations even in the shock layer at upper atmosphere with sharp absorption lines. At the same time the number of calculations is reduced by more than four order. Series of calculations of the radiation distribution function in 2D shock layer around a sphere and a blunt cone were performed using the local flat layer approximation and the Lebesgue averaging method. It is shown that the shock wave radiation becomes more significant both in value of the energy flux incident on the body surface and in the rate of energy exchange with the gas-dynamic flow in the case of increasing of the vehicle’s size.
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Investigation of the relationships of the size and production characteristics of phyto- and zooplankton in the Vistula and Curonian lagoons of the Baltic Sea. Part 1. The statistical analysis of long-term observation data and development of the structure for the mathematical model of the plankton food chain
Computer Research and Modeling, 2017, v. 9, no. 2, pp. 211-246In the paper the statistical relationships between the size and production characteristics of phytoplankton and zooplankton of the Vistula and Curonian lagoons, the Baltic Sea, were investigated. Research phytoplankton and zooplankton within the Russian part of the area of the Vistula and the Curonian lagoon was carried out on the monthly basis (from April to November) within the framework of long-term monitoring program on evaluating of ecological status of the lagoons. The size structure of plankton is the basis for understanding of the development of production processes, mechanisms of formation of the plankton species diversity and functioning of the lagoon ecosystems. As results of the work it was found that the maximum rate of photosynthesis and the integral value of the primary production with a change in cell volume of phytoplankton are changed according to a power law. The result shows that the smaller the size of algal cells in phytoplankton communities the more actively occur metabolism and the more effective they assimilate the solar energy. It is shown that the formation of plankton species diversity in ecosystems of lagoons is closely linked with the size structure of plankton communities and with features of development of the production processes. It is proposed the structure of a spatially homogenous mathematical model of the plankton food chain for the lagoon ecosystems taking into account the size spectrum and the characteristics of phytoplankton and zooplankton. The model parameters are the sizedependent indicators allometrically linked with average volumes of cells and organisms in different ranges of their sizes. In the model the algorithm for changes over time the coefficients of food preferences in the diet of zooplankton was proposed. Developed the size-dependent mathematical model of aquatic ecosystems allows to consider the impact of turbulent exchange on the size structure and temporal dynamics of the plankton food chain of the Vistula and Curonian lagoons. The model can be used to study the different regimes of dynamic behavior of plankton systems depending on the changes in the values of its parameters and external influences, as well as to quantify the redistribution of matter flows in ecosystems of the lagoons.
Keywords: ecosystem, nutrients, phytoplankton, zooplankton, plankton detritus, size structure, the maximum rate of photosynthesis, integrated primary production, zooplankton production, allometric scaling, Shannon index of species diversity, mathematical modeling, ecological simulation model, turbulent exchange.Views (last year): 9. -
A multilayer neural network for determination of particle size distribution in Dynamic Light Scattering problem
Computer Research and Modeling, 2019, v. 11, no. 2, pp. 265-273Views (last year): 16.Solution of Dynamic Light Scattering problem makes it possible to determine particle size distribution (PSD) from the spectrum of the intensity of scattered light. As a result of experiment, an intensity curve is obtained. The experimentally obtained spectrum of intensity is compared with the theoretically expected spectrum, which is the Lorentzian line. The main task is to determine on the basis of these data the relative concentrations of particles of each class presented in the solution. The article presents a method for constructing and using a neural network trained on synthetic data to determine PSD in a solution in the range of 1–500 nm. The neural network has a fully connected layer of 60 neurons with the RELU activation function at the output, a layer of 45 neurons and the same activation function, a dropout layer and 2 layers with 15 and 1 neurons (network output). The article describes how the network has been trained and tested on synthetic and experimental data. On the synthetic data, the standard deviation metric (rmse) gave a value of 1.3157 nm. Experimental data were obtained for particle sizes of 200 nm, 400 nm and a solution with representatives of both sizes. The results of the neural network and the classical linear methods are compared. The disadvantages of the classical methods are that it is difficult to determine the degree of regularization: too much regularization leads to the particle size distribution curves are much smoothed out, and weak regularization gives oscillating curves and low reliability of the results. The paper shows that the neural network gives a good prediction for particles with a large size. For small sizes, the prediction is worse, but the error quickly decreases as the particle size increases.
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Analysis of the dispersion characteristics of metallic photonic crystals by the plane-wave expansion method
Computer Research and Modeling, 2022, v. 14, no. 5, pp. 1059-1068A method for studying the dispersion characteristics of photonic crystals — media with a dielectric constant that varies periodically in space — is considered. The method is based on the representation of the wave functions and permittivity of a periodic medium in the form of Fourier series and their subsequent substitution into the wave equation, which leads to the formulation of the dispersion equation. Using the latter, for each value of the wave vector it is possible determined a set of eigen frequencies. Each of eigen frequency forms a separate dispersion curve as a continuous function of the wave number. The Fourier expansion coefficients of the permittivity, which depend on the vectors of the reciprocal lattice of the photonic crystal, are determined on the basis of data on the geometric characteristics of the elements that form the crystal, their electrophysical properties and the density of the crystal. The solution of the dispersion equation found makes it possible to obtain complete information about the number of modes propagating in a periodic structure at different frequencies, and about the possibility of forming band gaps, i.e. frequency ranges within which wave propagation through a photonic crystal is impossible. The focus of this work is on the application of this method to the analysis of the dispersion properties of metallic photonic crystals. The difficulties that arise in this case due to the presence of intrinsic dispersion properties of the metals that form the elements of the crystal are overcome by an analytical description of their permittivity based on the model of free electrons. As a result, a dispersion equation is formulated, the numerical solution of which is easily algorithmized. That makes possible to determine the dispersion characteristics of metallic photonic crystals with arbitrary parameters. Obtained by this method the results of calculation of dispersion diagrams, which characterize two-dimensional metal photonic crystals, are compared with experimental data and numerical results obtained using the method of self-consistent equations. Their good agreement is demonstrated.
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Fluorescent probe immobilization into enzyme molecules
Computer Research and Modeling, 2013, v. 5, no. 5, pp. 835-843Views (last year): 2. Citations: 3 (RSCI).The results of the experimental and theoretical researches of kinetics of erythrosine penetration into collagenase molecules have represented in this paper. The case with introduction of the compound (fluorescent probe) which has dimers to enzyme solution as an injection has been considered. It was shown that monomers and dimers can penetrate into enzyme molecules with formation complexes monomer — enzyme, dimer- enzyme. Moreover, transformation of probe fluorescence spectra is at each time moment. Spectrum maximum shift, and its form change. At a time, the immobilized dye dimers greatly impact to formation of end fluorescence spectrum. Well correlation between experimental and theoretical results confirms reality of the obtained data.
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Nonlinear supratransmission in a Pt3Al crystal at intense external influence
Computer Research and Modeling, 2019, v. 11, no. 1, pp. 109-117Views (last year): 18.The effect of the nonlinear supratransmission in crystal of A3B stoichiometry is studied by molecular dynamics on the example of Pt3Al alloy. This effect is the transfer of energy at frequencies outside the phonon spectrum of the crystal. Research of the mechanisms of energy transport from the material surface to the interior is the important task, both from the theoretical point of view and from the prospects for practical application in the modification of near-surface layers by treatment with intense external influence of various types. The model was a three-dimensional face-centered cubic crystal whose atoms interact by means of the multiparticle potential obtained by the embedded atom method, which provides greater realism of the model in comparison with the use of pair potentials. Various forms of oscillation of the external influence region are considered. The possibility of energy transport from the crystal surface to the interior is shown by excitation of quasi-breathers near the region of influence and their subsequent destruction in the crystal and scattering of the energy stored on them. The quasibreathers are high-amplitude nonlinear atoms' oscillations of the alloy lightweight component at frequencies outside the phonon spectrum of the crystal. This effect was observed not with every oscillation's form of the region of influence. Quasi-breathers appeared most intensely near the region of influence with sinusoidal form oscillations. The results obtained indicate that the contribution of quasi-breathers to the energy transfer through the crystal increases with increasing amplitude of the influence. The range of amplitudes from 0.05 to 0.5 Å is considered. The frequency of the influence varied from 0.2 to 15 THz, which ensured the coverage of the entire spectrum of lowamplitude oscillations for this crystal's model. The minimum magnitude of the external effect amplitude at which this effect was observed was found to be 0.15 Å. At amplitudes greater than 0.5 Å, the cell rapidly decays for frequencies close to the optical branch of the phonon spectrum. The results of the study can be useful for laser processing of materials, surface treatment by low-energy plasma, and also in radiation materials science.
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Synchronous components of financial time series
Computer Research and Modeling, 2017, v. 9, no. 4, pp. 639-655The article proposes a method of joint analysis of multidimensional financial time series based on the evaluation of the set of properties of stock quotes in a sliding time window and the subsequent averaging of property values for all analyzed companies. The main purpose of the analysis is to construct measures of joint behavior of time series reacting to the occurrence of a synchronous or coherent component. The coherence of the behavior of the characteristics of a complex system is an important feature that makes it possible to evaluate the approach of the system to sharp changes in its state. The basis for the search for precursors of sharp changes is the general idea of increasing the correlation of random fluctuations of the system parameters as it approaches the critical state. The increments in time series of stock values have a pronounced chaotic character and have a large amplitude of individual noises, against which a weak common signal can be detected only on the basis of its correlation in different scalar components of a multidimensional time series. It is known that classical methods of analysis based on the use of correlations between neighboring samples are ineffective in the processing of financial time series, since from the point of view of the correlation theory of random processes, increments in the value of shares formally have all the attributes of white noise (in particular, the “flat spectrum” and “delta-shaped” autocorrelation function). In connection with this, it is proposed to go from analyzing the initial signals to examining the sequences of their nonlinear properties calculated in time fragments of small length. As such properties, the entropy of the wavelet coefficients is used in the decomposition into the Daubechies basis, the multifractal parameters and the autoregressive measure of signal nonstationarity. Measures of synchronous behavior of time series properties in a sliding time window are constructed using the principal component method, moduli values of all pairwise correlation coefficients, and a multiple spectral coherence measure that is a generalization of the quadratic coherence spectrum between two signals. The shares of 16 large Russian companies from the beginning of 2010 to the end of 2016 were studied. Using the proposed method, two synchronization time intervals of the Russian stock market were identified: from mid-December 2013 to mid- March 2014 and from mid-October 2014 to mid-January 2016.
Keywords: financial time series, wavelets, entropy, multi-fractals, predictability, synchronization.Views (last year): 12. Citations: 2 (RSCI).
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