Результаты поиска по 'individual-based modeling':
Найдено статей: 40
  1. Simakov S.S.
    Modern methods of mathematical modeling of blood flow using reduced order methods
    Computer Research and Modeling, 2018, v. 10, no. 5, pp. 581-604

    The study of the physiological and pathophysiological processes in the cardiovascular system is one of the important contemporary issues, which is addressed in many works. In this work, several approaches to the mathematical modelling of the blood flow are considered. They are based on the spatial order reduction and/or use a steady-state approach. Attention is paid to the discussion of the assumptions and suggestions, which are limiting the scope of such models. Some typical mathematical formulations are considered together with the brief review of their numerical implementation. In the first part, we discuss the models, which are based on the full spatial order reduction and/or use a steady-state approach. One of the most popular approaches exploits the analogy between the flow of the viscous fluid in the elastic tubes and the current in the electrical circuit. Such models can be used as an individual tool. They also used for the formulation of the boundary conditions in the models using one dimensional (1D) and three dimensional (3D) spatial coordinates. The use of the dynamical compartment models allows describing haemodynamics over an extended period (by order of tens of cardiac cycles and more). Then, the steady-state models are considered. They may use either total spatial reduction or two dimensional (2D) spatial coordinates. This approach is used for simulation the blood flow in the region of microcirculation. In the second part, we discuss the models, which are based on the spatial order reduction to the 1D coordinate. The models of this type require relatively small computational power relative to the 3D models. Within the scope of this approach, it is also possible to include all large vessels of the organism. The 1D models allow simulation of the haemodynamic parameters in every vessel, which is included in the model network. The structure and the parameters of such a network can be set according to the literature data. It also exists methods of medical data segmentation. The 1D models may be derived from the 3D Navier – Stokes equations either by asymptotic analysis or by integrating them over a volume. The major assumptions are symmetric flow and constant shape of the velocity profile over a cross-section. These assumptions are somewhat restrictive and arguable. Some of the current works paying attention to the 1D model’s validation, to the comparing different 1D models and the comparing 1D models with clinical data. The obtained results reveal acceptable accuracy. It allows concluding, that the 1D approach can be used in medical applications. 1D models allow describing several dynamical processes, such as pulse wave propagation, Korotkov’s tones. Some physiological conditions may be included in the 1D models: gravity force, muscles contraction force, regulation and autoregulation.

    Views (last year): 62. Citations: 2 (RSCI).
  2. Plokhotnikov K.E.
    On the stability of the gravitational system of many bodies
    Computer Research and Modeling, 2021, v. 13, no. 3, pp. 487-511

    In this paper, a gravitational system is understood as a set of point bodies that interact according to Newton's law of attraction and have a negative value of the total energy. The question of the stability (nonstability) of a gravitational system of general position is discussed by direct computational experiment. A gravitational system of general position is a system in which the masses, initial positions, and velocities of bodies are chosen randomly from given ranges. A new method for the numerical solution of ordinary differential equations at large time intervals has been developed for the computational experiment. The proposed method allowed, on the one hand, to ensure the fulfillment of all conservation laws by a suitable correction of solutions, on the other hand, to use standard methods for the numerical solution of systems of differential equations of low approximation order. Within the framework of this method, the trajectory of a gravitational system in phase space is assembled from parts, the duration of each of which can be macroscopic. The constructed trajectory, generally speaking, is discontinuous, and the points of joining of individual pieces of the trajectory act as branch points. In connection with the latter circumstance, the proposed method, in part, can be attributed to the class of Monte Carlo methods. The general conclusion of a series of computational experiments has shown that gravitational systems of general position with a number of bodies of 3 or more, generally speaking, are unstable. In the framework of the proposed method, special cases of zero-equal angular momentum of a gravitational system with a number of bodies of 3 or more, as well as the problem of motion of two bodies, are specially considered. The case of numerical modeling of the dynamics of the solar system in time is considered separately. From the standpoint of computational experiments based on analytical methods, as well as direct numerical methods of high-order approximation (10 and higher), the stability of the solar system was previously demonstrated at an interval of five billion years or more. Due to the limitations on the available computational resources, the stability of the dynamics of the planets of the solar system within the framework of the proposed method was confirmed for a period of ten million years. With the help of a computational experiment, one of the possible scenarios for the disintegration of the solar systems is also considered.

  3. The paper provides the mathematical and numerical models of the interrelated thermo- and hydrodynamic processes in the operational mode of development the unified oil-producing complex during the hydrogel flooding of the non-uniform oil reservoir exploited with a system of arbitrarily located injecting wells and producing wells equipped with submersible multistage electrical centrifugal pumps. A special feature of our approach is the modeling of the special ground-based equipment operation (control stations of submersible pumps, drossel devices on the head of producing wells), designed to regulate the operation modes of both the whole complex and its individual elements.

    The complete differential model includes equations governing non-stationary two-phase five-component filtration in the reservoir, quasi-stationary heat and mass transfer in the wells and working channels of pumps. Special non-linear boundary conditions and dependencies simulate, respectively, the influence of the drossel diameter on the flow rate and pressure at the wellhead of each producing well and the frequency electric current on the performance characteristics of the submersible pump unit. Oil field development is also regulated by the change in bottom-hole pressure of each injection well, concentration of the gel-forming components pumping into the reservoir, their total volume and duration of injection. The problem is solved numerically using conservative difference schemes constructed on the base of the finite difference method, and developed iterative algorithms oriented on the parallel computing technologies. Numerical model is implemented in a software package which can be considered as the «Intellectual System of Wells» for the virtual control the oil field development.

  4. The work is devoted to the problem of creating a model with stationary parameters using historical data under conditions of unknown disturbances. The case is considered when a representative sample of object states can be formed using historical data accumulated only over a significant period of time. It is assumed that unknown disturbances can act in a wide frequency range and may have low-frequency and trend components. In such a situation, including data from different time periods in the sample can lead to inconsistencies and greatly reduce the accuracy of the model. The paper provides an overview of approaches and methods for data harmonization. In this case, the main attention is paid to data sampling. An assessment is made of the applicability of various data sampling options as a tool for reducing the level of uncertainty. We propose a method for identifying a self-leveling object model using data accumulated over a significant period of time under conditions of unknown disturbances with a wide frequency range. The method is focused on creating a model with stationary parameters that does not require periodic reconfiguration to new conditions. The method is based on the combined use of sampling and presentation of data from individual periods of time in the form of increments relative to the initial point in time for the period. This makes it possible to reduce the number of parameters that characterize unknown disturbances with a minimum of assumptions that limit the application of the method. As a result, the dimensionality of the search problem is reduced and the computational costs associated with setting up the model are minimized. It is possible to configure both linear and, in some cases, nonlinear models. The method was used to develop a model of closed cooling of steel on a unit for continuous hot-dip galvanizing of steel strip. The model can be used for predictive control of thermal processes and for selecting strip speed. It is shown that the method makes it possible to develop a model of thermal processes from a closed cooling section under conditions of unknown disturbances, including low-frequency components.

  5. Khoroshev A.S., Puzin V.S., Shchuchkin D.A., Khorosheva E.V.
    Approaches to creating precise geometric models of steel wire ropes in the Gmsh environment using the OpenCascade Core Technology engine
    Computer Research and Modeling, 2024, v. 16, no. 6, pp. 1399-1415

    A review of the problems of preparing accurate geometric models of steel ropes based on mathematical models without significant simplifications, taking into account the intended purpose of the model, is carried out. Possible approaches to the generation of precise geometric models of steel ropes that have no fundamental limitations on their integration in computational domains and the subsequent construction of finite element models based on them are shown. A generalized parameterized geometric model of single and double twist ropes and its algorithmic implementation using the OpenCASCADE Core Technology geometric modeling kernel in the Gmsh environment (open source software) is considered. The problems of using generic tabular data from steel rope assortment standards as initial data for constructing geometric models are considered. Methods of preliminary verification of collisions of a geometric model based on the initial data of a geometric model are given. Post-verification methods based on Boolean operations over rope wire bodies are given to identify incorrect results of generating models of wire bodies with curvilinear side surfaces based on the algorithm of sequential hierarchical construction of individual wires of single strand and sequential copying of it. Various methods of the process of constructing geometric models of rope wires by extrusion are shown: through a sequence of generatrix with the formation of a body limited by curvilinear surfaces, through a sequence of generatrix with the formation of a body limited by linearly approximated surfaces, and extrusion of one generatrix along a single guideline. The computational complexity of the geometric model generation and the required volume of RAM for the two most universal methods of creating a body of wire are investigated. A method for estimating the value of the step of the arrangement of the generatrix of a single wire is shown, and the influence of its value on the computational complexity of the procedure of wire construction is investigated. Recommendations are given for choosing the value of the radial gap between the layers of wires. An algorithmic implementation of the method for searching for collisions of a geometric model of a steel rope in a non-interactive mode is shown. Approaches to the formation of procedures for processing collisions are proposed. Approaches presented in the article can be implemented in the form of software modules for execution in the Gmsh environment, as well as for another environment using the OpenCascade Core Technology geometric modeling kernel. Such modules allow automation of the construction of accurate geometric models of steel ropes in any configuration without fundamental restrictions on subsequent use, both stand-alone and in the form of objects (primitives) suitable for integration in a third-party model.

  6. Ivanov V.M.
    Simulation model of spline interpolation of piecewise linear trajectory for CNC machine tools
    Computer Research and Modeling, 2025, v. 17, no. 2, pp. 225-242

    In traditional CNC systems, each segment of a piecewise linear trajectory is described by a separate block of the control program. In this case, a trapezoidal trajectory of movement is formed, and the stitching of individual sections is carried out at zero values of speed and acceleration. Increased productivity is associated with continuous processing, which in modern CNC systems is achieved through the use of spline interpolation. For a piecewise linear trajectory, which is basic for most products, the most appropriate is a first-degree spline. However, even in the simplest case of spline interpolation, the closed nature of the basic software from leading manufacturers of CNC systems limits the capabilities of not only developers, but also users. Taking this into account, the purpose of this work is a detailed study of the structural organization and operation algorithms of the simulation model of piecewise linear spline interpolation. Limitations on jerk and acceleration are considered as the main measure to reduce dynamic processing errors. In this case, special attention is paid to the S-shaped shape of the speed curve in the acceleration and deceleration sections. This is due to the conditions for the implementation of spline interpolation, one of which is the continuity of movement, which is ensured by the equality of the first and second derivatives when joining sections of the trajectory. Such a statement corresponds to the principles of implementing combined control systems of a servo electric drive, which provide partial invariance to control and disturbing effects. The reference model of a spline interpolator is adopted as the basis of the structural organization. The issues of processing scaling, which are based on a decrease in the vector speed in relation to the base value, are also considered. This allows increasing the accuracy of movements. It is shown that the range of changes in the speed of movements can be more than ten thousand, and is limited only by the speed control capabilities of the actuators.

  7. Zubkova E.V., Zhukova L.A., Frolov P.V., Shanin V.N.
    A.S. Komarov’s publications about cellular automata modelling of the population-ontogenetic development in plants: a review
    Computer Research and Modeling, 2016, v. 8, no. 2, pp. 285-295

    The possibilities of cellular automata simulation applied to herbs and dwarf shrubs are described. Basicprinciples of discrete description of the ontogenesis of plants on which the mathematical modeling based are presents. The review discusses the main research results obtained with the use of models that revealing the patterns of functioning of populations and communities. The CAMPUS model and the results of computer experiment to study the growth of two clones of lingonberry with different geometry of the shoots are described. The paper is dedicated to the works of the founder of the direction of prof. A. S. Komarov. A list of his major publications on this subject is given.

    Views (last year): 2. Citations: 6 (RSCI).
  8. Chernavskaya O.D.
    Dynamical theory of information as a basis for natural-constructive approach to modeling a cognitive process
    Computer Research and Modeling, 2017, v. 9, no. 3, pp. 433-447

    The main statements and inferences of the Dynamic Theory Information (DTI) are considered. It is shown that DTI provides the possibility two reveal two essentially important types of information: objective (unconventional) and subjective (conventional) informtion. There are two ways of obtaining information: reception (perception of an already existing one) and generation (production of new) information. It is shown that the processes of generation and perception of information should proceed in two different subsystems of the same cognitive system. The main points of the Natural-Constructivist Approach to modeling the cognitive process are discussed. It is shown that any neuromorphic approach faces the problem of Explanatory Gap between the “Brain” and the “Mind”, i. e. the gap between objectively measurable information about the ensemble of neurons (“Brain”) and subjective information about the human consciousness (“Mind”). The Natural-Constructive Cognitive Architecture developed within the framework of this approach is discussed. It is a complex block-hierarchical combination of several neuroprocessors. The main constructive feature of this architecture is splitting the whole system into two linked subsystems, by analogy with the hemispheres of the human brain. One of the subsystems is processing the new information, learning, and creativity, i.e. for the generation of information. Another subsystem is responsible for processing already existing information, i.e. reception of information. It is shown that the lowest (zero) level of the hierarchy is represented by processors that should record images of real objects (distributed memory) as a response to sensory signals, which is objective information (and refers to the “Brain”). The next hierarchy levels are represented by processors containing symbols of the recorded images. It is shown that symbols represent subjective (conventional) information created by the system itself and providing its individuality. The highest hierarchy levels containing the symbols of abstract concepts provide the possibility to interpret the concepts of “consciousness”, “sub-consciousness”, “intuition”, referring to the field of “Mind”, in terms of the ensemble of neurons. Thus, DTI provides an opportunity to build a model that allows us to trace how the “Mind” could emerge basing on the “Brain”.

    Views (last year): 6.
  9. Tereshko V.н.
    Individual optimality does not guarantee community optimality: why don't honeybees analyze dances?
    Computer Research and Modeling, 2025, v. 17, no. 2, pp. 261-275

    We developed a model of honeybee colony foraging based on reaction – diffusion equations. Employed bees transmit information about their food sources using dance, and job seekers in the hive can choose any dance they like and thus join the exploitation of the corresponding source. We consider two strategies of dance selection: a targeted one, when bees analyze information on the dance floor and choose the most energetic and longest dance corresponding to the most profitable source, and a simple random choice of the first dance they encounter. Modelling showed that the greatest profit (food influx into the hive) is provided by the random choice of dance, as paradoxical as it may seem at first glance. Optimization of profit by each agent for itself (targeted choice of dances) is rather a disadvantage for the colony, and “non-optimality” in dance choice can be the result of useful evolutionary adaptation.

  10. Kriuchechnikova A.N., Levdik T.G., Brazhe A.R.
    Modelling of astrocyte morphology with space colonization algorithm
    Computer Research and Modeling, 2025, v. 17, no. 3, pp. 465-481

    We examine a phenomenological algorithm for generating morphology of astrocytes, a major class of glial brain cells, based on morphometric data of rat brain protoplasmic astrocytes and observations of general cell development trends in vivo, based on current literature. We adapted the Space Colonization Algorithm (SCA) for procedural generation of astrocytic morphology from scratch. Attractor points used in generation were spatially distributed in the model volume according to the synapse distribution density in the rat hippocampus tissue during the first week of postnatal brain development. We analyzed and compared astrocytic morphology reconstructions at different brain development stages using morphometry estimation techniques such as Sholl analysis, number of bifurcations, number of terminals, total tree length, and maximum branching order. Using morphometric data from protoplasmic astrocytes of rats at different ages, we selected the necessary generation parameters to obtain the most realistic three-dimensional cell morphology models. We demonstrate that our proposed algorithm allows not only to obtain individual cell geometry but also recreate the phenomenon of tiling domain organization in the cell populations. In our algorithm tiling emerges due to the cell competition for territory and the assignment of unique attractor points to their processes, which then become unavailable to other cells and their processes. We further extend the original algorithm by splitting morphology generation in two phases, thereby simulating astrocyte tree structure development during the first and third-fourth weeks of rat postnatal brain development: rapid space exploration at the first stage and extensive branching at the second stage. To this end, we introduce two attractor types to separate two different growth strategies in time. We hypothesize that the extended algorithm with dynamic attractor generation can explain the formation process of fine astrocyte cell structures and maturation of astrocytic arborizations.

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