Результаты поиска по 'information':
Найдено статей: 184
  1. Pirutin S.K., Shank M.A., Jia S., Konuhov I.V., Todorenko D.A., Chervitsov R.N., Fursova P.V., Kabashnikova L.F., Plusnina T.Yu., Khruschev S.S., Riznichenko G.Yu., Rubin A.B.
    Comprehensive analysis of copper ions effect on the primary processes of photosynthesis in Scenedesmus quadricauda based on chlorophyll a fluorescence measurements in suspension and on single cells
    Computer Research and Modeling, 2025, v. 17, no. 2, pp. 293-322

    The effect of copper ions on the primary processes of photosynthesis in freshwater microalgae Scenedesmus quadricauda was studied using a set of biophysical and mathematical methods. Chlorophyll a fluorescence transients were recorded both in cell suspensions and at the level of single cells after incubation at copper concentrations of 0.1–10 $\mu$M under light and dark conditions. It was found that copper has a dose-dependent effect on the photosynthetic apparatus of microalgae. At low copper concentration (0.1 $\mu$M), a stimulating effect on a number of studied parameters was observed, whereas significant disruption of Photosystem II activity was detected at 10 $\mu$M. The method of analyzing fluorescence of single cells proved to be more sensitive compared to traditional suspension measurements, allowing the detection of heterogeneous cellular responses to the toxicant. Analysis of chlorophyll a fast fluorescence kinetics showed that the JIP-test parameters $\delta_{Ro}$ and $\varphi_{Ro}$ were the most sensitive to copper exposure and were significantly different from the control when exposed not only to high but also to medium (1 $\mu$M) copper concentrations. The decrease in photochemical activity of cells during light incubation was less pronounced compared to dark conditions. The application of data normalization to optical density at $\lambda = 455$ nm significantly increased the sensitivity of the method and accuracy of result interpretation. The use of L1-regularization (LASSO) by the least angles method (LARS) for the spectral multi-exponential approximation of the fluorescence transients allowed us to reveal their temporal characteristics. Mathematical analysis of the obtained data suggested that copper exposure leads to increased non-photochemical quenching of fluorescence, which serves as a protective mechanism for dissipating excess excitation energy. The revealed heterogeneity of cellular responses to copper action may have important ecological significance, ensuring the survival of part of the population under stress conditions. The obtained data confirm the promise of using fluorescent analysis methods for early diagnosis of heavy metal stress effects on photosynthesizing organisms.

  2. Pirogov A.A.
    Application of beta regression to the CD44 alternative splicing problem
    Computer Research and Modeling, 2026, v. 18, no. 3, pp. 697-714

    Aberrant alternative splicing of the CD44 gene drives colorectal cancer progression and facilitates the emergence of cancer stem cells. Although biomedical research recognizes this transmembrane glycoprotein as a major catalyst of malignancy, deciphering its multi-isoform regulatory networks remains a complex analytical challenge. To address this knowledge gap, this study presents a machine learning framework designed to decode these biological mechanisms. The author constructed a neural network regressor based on beta regression to model bounded isoform proportions. This computational architecture jointly estimates both the mean and the precision parameters of the underlying probability distribution. Furthermore, the system employs elastic net regularization to perform quantitative feature selection from highdimensional molecular expression data.

    The investigation evaluates the proposed framework using gene expression profiles from colorectal cancer patients. The primary objective involves identifying specific ribonucleic acid-binding proteins acting as regulatory splicing factors. The experimental design contrasts two distinct mathematical modeling strategies. The first configuration incorporates an independent ”one-vs-all” approach that treats each transcript variant as an isolated regression target. The second formulation utilizes a structured ”isoform tree” method that directly mirrors hierarchical exon inclusion relationships. Validation experiments on synthetically generated datasets confirmed the mathematical integrity of the network. The model recovered true distribution parameters with precision and exhibited no systematic bias. Comprehensive empirical comparisons subsequently demonstrated that the independent ”one-vs-all” layout consistently outperforms the hierarchical tree configuration in predictive stability and accuracy.

    The computational analysis maps the regulatory landscape of the CD44 gene. The framework validates several established splicing factors while uncovering new candidate proteins, including ACO1, NUDT21, and AGO2. Based on these statistical associations, the paper introduces a biological hypothesis. This concept functionally connects intracellular iron metabolism via the ACO1 protein with the shifting balance of CD44 variants. These discoveries provide deeper insights into oncogenic splicing regulation. Ultimately, they highlight molecular targets for future therapeutic interventions aimed at suppressing the cancer stem cell phenotype.

  3. Baranov A.V., Balashov N.A., Kutovskiy N.A., Semenov R.N.
    Cloud Infrastructure at JINR
    Computer Research and Modeling, 2015, v. 7, no. 3, pp. 463-467

    Cloud technologies are already wide spread among IT industry and start to gain popularity in academic field. There are several fundamental cloud models: infrastructure as a service (IaaS), platform as a service (PaaS), and software as a service (SaaS). The article describes the cloud infrastructure deployed at the Laboratory of Information Technologies of the Joint Institute for Nuclear Research (LIT JINR). It explains the goals of the cloud infrastructure creation, specifics of the implementation, its utilization, current work and plans for development.

    Views (last year): 1. Citations: 5 (RSCI).
  4. Kirilyuk I.L., Volynsky A.I., Kruglova M.S., Kuznetsova A.V., Rubinstein A.A., Sen'ko O.V.
    Empirical testing of institutional matrices theory by data mining
    Computer Research and Modeling, 2015, v. 7, no. 4, pp. 923-939

    The paper has a goal to identify a set of parameters of the environment and infrastructure with the most significant impact on institutional-matrices that dominate in different countries. Parameters of environmental conditions includes raw statistical indices, which were directly derived from the databases of open access, as well as complex integral indicators that were by method of principal components. Efficiency of discussed parameters in task of dominant institutional matrices type recognition (X or Y type) was evaluated by a number of methods based on machine learning. It was revealed that greatest informational content is associated with parameters characterizing risk of natural disasters, level of urbanization and the development of transport infrastructure, the monthly averages and seasonal variations of temperature and precipitation.

    Views (last year): 7. Citations: 13 (RSCI).
  5. Leonov A.V., Kоltovskaya Е.V., Chicherina О.V.
    Biohydrochemical portrait of the White Sea
    Computer Research and Modeling, 2018, v. 10, no. 1, pp. 125-160

    The biohydrochemical portrait of the White Sea is constructed on the CNPSi-model calculations based on long-term mean annual observations (average monthly hydrometeorological, hydrochemical and hydrobiological parameters of the marine environment) as well as on updated information on the nutrient input to the sea with the runoff of the main river tributaries (Niva, Onega, Northern Dvina, Mezen, Kem, Keret). Parameters of the marine environment are temperature, light, transparency, and biogenic load. Ecological characteristics of the sea “portrait” were calculated for nine marine areas (Kandalaksha, Onega, Dvinsky, Mezensky Bays, Solovetsky Islands, Basin, Gorlot, Voronka, Chupa Bay), these are: the concentration changes of organic and mineral compounds of biogenic elements (C, N, P, Si), the biomass of organisms of the lower trophic level (heterotrophic bacteria, diatomic phytoplankton, herbivorous and predatory zooplankton) and other ones (rates of substance concentration and organism biomass changes, internal and external substance flows, balances of individual substances and nutrients as a whole). Parameters of the marine environment state (water temperature, ratio of mineral fractions N < P) and dominant diatom phytoplankton in the sea (abundance, production, biomass, chlorophyll content a) were calculated and compared with the results of individual surveys (for 1972–1991 and 2007–2012) of the White Sea water areas. The methods for estimating the values of these parameters from observations and calculations differ, however, the calculated values of the phytoplankton state are comparable with the measurements and are similar to the data given in the literature. Therefore, according to the literature data, the annual production of diatoms in the White Sea is estimated at 1.5–3 million tons C (at a vegetation period of 180 days), and according to calculations it is ~2 and 3.5 million tons C for vegetation period of 150 and 180 days respectively.

    Views (last year): 15. Citations: 1 (RSCI).
  6. Ketova K.V., Romanovsky Y.M., Rusyak I.G.
    Mathematical modeling of the human capital dynamic
    Computer Research and Modeling, 2019, v. 11, no. 2, pp. 329-342

    In the conditions of the development of modern economy, human capital is one of the main factors of economic growth. The formation of human capital begins with the birth of a person and continues throughout life, so the value of human capital is inseparable from its carriers, which in turn makes it difficult to account for this factor. This has led to the fact that currently there are no generally accepted methods of calculating the value of human capital. There are only a few approaches to the measurement of human capital: the cost approach (by income or investment) and the index approach, of which the most well-known approach developed under the auspices of the UN.

    This paper presents the assigned task in conjunction with the task of demographic dynamics solved in the time-age plane, which allows to more fully take into account the temporary changes in the demographic structure on the dynamics of human capital.

    The task of demographic dynamics is posed within the framework of the Mac-Kendrick – von Foerster model on the basis of the equation of age structure dynamics. The form of distribution functions for births, deaths and migration of the population is determined on the basis of the available statistical information. The numerical solution of the problem is given. The analysis and forecast of demographic indicators are presented. The economic and mathematical model of human capital dynamics is formulated on the basis of the demographic dynamics problem. The problem of modeling the human capital dynamics considers three components of capital: educational, health and cultural (spiritual). Description of the evolution of human capital components uses an equation of the transfer equation type. Investments in human capital components are determined on the basis of budget expenditures and private expenditures, taking into account the characteristic time life cycle of demographic elements. A one-dimensional kinetic equation is used to predict the dynamics of the total human capital. The method of calculating the dynamics of this factor is given as a time function. The calculated data on the human capital dynamics are presented for the Russian Federation. As studies have shown, the value of human capital increased rapidly until 2008, in the future there was a period of stabilization, but after 2014 there is a negative dynamics of this value.

    Views (last year): 34.
  7. Umavovskiy A.V.
    Data-driven simulation of a two-phase flow in heterogenous porous media
    Computer Research and Modeling, 2021, v. 13, no. 4, pp. 779-792

    The numerical methods used to simulate the evolution of hydrodynamic systems require the considerable use of computational resources thus limiting the number of possible simulations. The data-driven simulation technique is one promising approach to the development of heuristic models, which may speed up the study of such models. In this approach, machine learning methods are used to tune the weights of an artificial neural network that predicts the state of a physical system at a given point in time based on initial conditions. This article describes an original neural network architecture and a novel multi-stage training procedure which create a heuristic model of a two-phase flow in a heterogeneous porous medium. The neural network-based model predicts the states of the grid cells at an arbitrary timestep (within the known constraints), taking in only the initial conditions: the properties of the heterogeneous permeability of the medium and the location of sources and sinks. The proposed model requires orders of magnitude less processor time in comparison with the classical numerical method, which served as a criterion for evaluating the effectiveness of the trained model. The proposed architecture includes a number of subnets trained in various combinations on several datasets. The techniques of adversarial training and weight transfer are utilized.

  8. Basaeva E.K., Kamenetsky E.S., Khosaeva Z.K.
    Assessment of the elite–people interaction in post-soviet countries using the Bayesian approach
    Computer Research and Modeling, 2021, v. 13, no. 6, pp. 1233-1247

    A previously developed model that describes the dynamics of social tension in a society divided into two groups: the elite and the people was considered. This model took into account the impact of economic situation changes and the elite–people interaction. The model has been modified by including in the equation describing the tension of the people, a term that takes into account the adaptation of the people to the current situation.

    The model coefficients estimation is an important task, the solution of which allows obtaining information about the nature of the interaction between elite and people. We believe that the solution of the system of model equations with optimal coefficients is closest to the values of the indicator characterizing social tension. We used the normalized level of homicide rate as an indicator of social tension.

    The model contains seven coefficients. Two coefficients characterizing the influence of economic situation changes on elite and people are taken equal to each other and the same for all countries. We obtained their estimations using a simplified model that takes into account only the change in the economic situation and allows an analytical solution.

    The Bayesian approach was used to estimate the remaining five coefficients of model for post-Soviet countries. The prior probability densities of the four coefficients for all countries under consideration were taken to be the same. The prior probability density of fifth coefficient was considered to depend on the regime of government (authoritarian or «transitional»). We assumed that the calculated tension matches with the corresponding indicator of tension in cases where the difference between them does not exceed 5%.

    The calculations showed that for the post-Soviet countries, a good coincidence was obtained between the calculated values of the people tension and the normalized level of homicide rate. The coincidence is satisfactory only on average.

    The following main results was obtained at the work: under the influence of some «significant» events in 40% of post-Soviet countries, there was a rapid change in the nature of interaction between the elite and the people; regional feature have some influence on the elite–people interaction; the type of government does not significantly affect the elite–people interaction; the method for assessing the stability of the country by the value of the model coefficients is proposed.

  9. Jeeva N., Dharmalingam K.M.
    Sensitivity analysis and semi-analytical solution for analyzing the dynamics of coffee berry disease
    Computer Research and Modeling, 2024, v. 16, no. 3, pp. 731-753

    Coffee berry disease (CBD), resulting from the Colletotrichum kahawae fungal pathogen, poses a severe risk to coffee crops worldwide. Focused on coffee berries, it triggers substantial economic losses in regions relying heavily on coffee cultivation. The devastating impact extends beyond agricultural losses, affecting livelihoods and trade economies. Experimental insights into coffee berry disease provide crucial information on its pathogenesis, progression, and potential mitigation strategies for control, offering valuable knowledge to safeguard the global coffee industry. In this paper, we investigated the mathematical model of coffee berry disease, with a focus on the dynamics of the coffee plant and Colletotrichum kahawae pathogen populations, categorized as susceptible, exposed, infected, pathogenic, and recovered (SEIPR) individuals. To address the system of nonlinear differential equations and obtain semi-analytical solution for the coffee berry disease model, a novel analytical approach combining the Shehu transformation, Akbari – Ganji, and Pade approximation method (SAGPM) was utilized. A comparison of analytical results with numerical simulations demonstrates that the novel SAGPM is excellent efficiency and accuracy. Furthermore, the sensitivity analysis of the coffee berry disease model examines the effects of all parameters on the basic reproduction number $R_0$. Moreover, in order to examine the behavior of the model individuals, we varied some parameters in CBD. Through this analysis, we obtained valuable insights into the responses of the coffee berry disease model under various conditions and scenarios. This research offers valuable insights into the utilization of SAGPM and sensitivity analysis for analyzing epidemiological models, providing significant utility for researchers in the field.

  10. Rebrova A.A., Danilov A.A.
    Method for coronary blood flow velocity estimation based on angiographic images
    Computer Research and Modeling, 2026, v. 18, no. 3, pp. 715-735

    In modern cardiology, accurate assessment of the functional significance of coronary artery stenoses is a critical factor for selecting treatment strategies and making informed clinical decisions. This paper presents an automated algorithm for processing dynamic X-ray angiographic image sequences aimed at estimating blood flow velocity. This parameter serves as the basis for determining the Quantitative Flow Ratio (QFR), which acts as an effective noninvasive alternative to traditional invasive fractional flow reserve (FFR) measurements. The proposed methodology successfully overcomes classic challenges of angiographic analysis, such as vessel motion artifacts during the cardio-respiratory cycle, variable contrast opacification, and the geometric complexity of the vascular tree in two-dimensional projections.

    The presented processing workflow includes several key stages. Initially, frame preprocessing is performed to suppress noise and filter out the anatomical background. Subsequently, segmentation is implemented using a Sato filter and Otsu thresholding, followed by skeletonization to extract vessel centerlines. Particular attention is paid to the algorithm for automated identification of bifurcation points and the filtration of artifactual intersections caused by vessel overlapping. To ensure data continuity, a temporal tracking method for the target segment based on template correlation is applied, which is especially important during phases with low contrast agent concentration. The mathematical core of the algorithm is based on solving a 1D inverse problem for the advection-diffusion equation, allowing for the recovery of blood flow velocity from temporal intensity curves.

    As part of the study, a detailed validation of the method was conducted by comparing automated calculation results with manual expert measurements across ten clinical datasets. The results confirm the robustness of the computational scheme within physiologically relevant ranges and its ability to significantly reduce inter-observer variability. The developed approach minimizes the need for physician intervention in the data processing stage, opening up prospects for creating real-time clinical decision support systems in the catheterization laboratory setting.

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International Interdisciplinary Conference "Mathematics. Computing. Education"