All issues
- 2026 Vol. 18
- 2025 Vol. 17
- 2024 Vol. 16
- 2023 Vol. 15
- 2022 Vol. 14
- 2021 Vol. 13
- 2020 Vol. 12
- 2019 Vol. 11
- 2018 Vol. 10
- 2017 Vol. 9
- 2016 Vol. 8
- 2015 Vol. 7
- 2014 Vol. 6
- 2013 Vol. 5
- 2012 Vol. 4
- 2011 Vol. 3
- 2010 Vol. 2
- 2009 Vol. 1
-
Synthesis of the structure of organised systems as central problem of evolutionary cybernetics
Computer Research and Modeling, 2023, v. 15, no. 5, pp. 1103-1124The article provides approaches to evolutionary modelling of synthesis of organised systems and analyses methodological problems of evolutionary computations of this kind. Based on the analysis of works on evolutionary cybernetics, evolutionary theory, systems theory and synergetics, we conclude that there are open problems in formalising the synthesis of organised systems and modelling their evolution. The article emphasises that the theoretical basis for the practice of evolutionary modelling is the principles of the modern synthetic theory of evolution. Our software project uses a virtual computing environment for machine synthesis of problem solving algorithms. In the process of modelling, we obtained the results on the basis of which we conclude that there are a number of conditions that fundamentally limit the applicability of genetic programming methods in the tasks of synthesis of functional structures. The main limitations are the need for the fitness function to track the step-by-step approach to the solution of the problem and the inapplicability of this approach to the problems of synthesis of hierarchically organised systems. We note that the results obtained in the practice of evolutionary modelling in general for the whole time of its existence, confirm the conclusion the possibilities of genetic programming are fundamentally limited in solving problems of synthesizing the structure of organized systems. As sources of fundamental difficulties for machine synthesis of system structures the article points out the absence of directions for gradient descent in structural synthesis and the absence of regularity of random appearance of new organised structures. The considered problems are relevant for the theory of biological evolution. The article substantiates the statement about the biological specificity of practically possible ways of synthesis of the structure of organised systems. As a theoretical interpretation of the discussed problem, we propose to consider the system-evolutionary concept of P.K.Anokhin. The process of synthesis of functional structures in this context is an adaptive response of organisms to external conditions based on their ability to integrative synthesis of memory, needs and information about current conditions. The results of actual studies are in favour of this interpretation. We note that the physical basis of biological integrativity may be related to the phenomena of non-locality and non-separability characteristic of quantum systems. The problems considered in this paper are closely related to the problem of creating strong artificial intelligence.
-
Modeling time series trajectories using the Liouville equation
Computer Research and Modeling, 2024, v. 16, no. 3, pp. 585-598This paper presents algorithm for modeling set of trajectories of non-stationary time series, based on a numerical scheme for approximating the sample density of the distribution function in a problem with fixed ends, when the initial distribution for a given number of steps transforms into a certain final distribution, so that at each step the semigroup property of solving the Liouville equation is satisfied. The model makes it possible to numerically construct evolving densities of distribution functions during random switching of states of the system generating the original time series.
The main problem is related to the fact that with the numerical implementation of the left-hand differential derivative in time, the solution becomes unstable, but such approach corresponds to the modeling of evolution. An integrative approach is used while choosing implicit stable schemes with “going into the future”, this does not match the semigroup property at each step. If, on the other hand, some real process is being modeled, in which goal-setting presumably takes place, then it is desirable to use schemes that generate a model of the transition process. Such model is used in the future in order to build a predictor of the disorder, which will allow you to determine exactly what state the process under study is going into, before the process really went into it. The model described in the article can be used as a tool for modeling real non-stationary time series.
Steps of the modeling scheme are described further. Fragments corresponding to certain states are selected from a given time series, for example, trends with specified slope angles and variances. Reference distributions of states are compiled from these fragments. Then the empirical distributions of the duration of the system’s stay in the specified states and the duration of the transition time from state to state are determined. In accordance with these empirical distributions, a probabilistic model of the disorder is constructed and the corresponding trajectories of the time series are modeled.
-
Computational treatment of natural language text for intent detection
Computer Research and Modeling, 2024, v. 16, no. 7, pp. 1539-1554Intent detection plays a crucial role in task-oriented conversational systems. To understand the user’s goal, the system relies on its intent detector to classify the user’s utterance, which may be expressed in different forms of natural language, into intent classes. However, lack of data, and the efficacy of intent detection systems has been hindered by the fact that the user’s intent text is typically characterized by short, general sentences and colloquial expressions. The process of algorithmically determining user intent from a given statement is known as intent detection. The goal of this study is to develop an intent detection model that will accurately classify and detect user intent. The model calculates the similarity score of the three models used to determine their similarities. The proposed model uses Contextual Semantic Search (CSS) capabilities for semantic search, Latent Dirichlet Allocation (LDA) for topic modeling, the Bidirectional Encoder Representations from Transformers (BERT) semantic matching technique, and the combination of LDA and BERT for text classification and detection. The dataset acquired is from the broad twitter corpus (BTC) and comprises various meta data. To prepare the data for analysis, a pre-processing step was applied. A sample of 1432 instances were selected out of the 5000 available datasets because manual annotation is required and could be time-consuming. To compare the performance of the model with the existing model, the similarity scores, precision, recall, f1 score, and accuracy were computed. The results revealed that LDA-BERT achieved an accuracy of 95.88% for intent detection, BERT with an accuracy of 93.84%, and LDA with an accuracy of 92.23%. This shows that LDA-BERT performs better than other models. It is hoped that the novel model will aid in ensuring information security and social media intelligence. For future work, an unsupervised LDA-BERT without any labeled data can be studied with the model.
-
A surrogate neural network method for restoring the flow field from a homogeneous field by iterations in calculations of steady turbulent flows
Computer Research and Modeling, 2025, v. 17, no. 2, pp. 179-197In recent years, the use of neural network models for solving aerodynamics problems has become widespread. These models, trained on a set of previously obtained solutions, predict solutions to new problems. They are, in essence, interpolation algorithms. An alternative approach is to construct a neural network operator. This is a neural network that reproduces a numerical method used to solve a problem. It allows to find the solution in iterations. The paper considers the construction of such an operator using the UNet neural network with a spatial attention mechanism. It solves flow problems on a rectangular uniform grid that is common to a streamlined body and flow field. A correction mechanism is proposed to clarify the obtained solution. The problem of the stability of such an algorithm for solving a stationary problem is analyzed, and a comparison is made with other variants of its construction, including pushforward trick and positional encoding. The issue of selecting a set of iterations for forming a train dataset is considered, and the behavior of the solution is assessed using repeated use of a neural network operator.
A demonstration of the method is provided for the case of flow around a rounded plate with a turbulent flow, with various options for rounding, for fixed parameters of the incoming flow, with Reynolds number $\text{Re} = 10^5$ and Mach number $M = 0.15$. Since flows with these parameters of the incoming flow can be considered incompressible, only velocity components are directly studied. At the same time, the neural network model used to construct the operator has a common decoder for both velocity components. Comparison of flow fields and velocity profiles along the normal and outline of the body, obtained using a neural network operator and numerical methods, is carried out. Analysis is performed both on the plate and rounding. Simulation results confirm that the neural network operator allows finding a solution with high accuracy and stability.
-
The adaptive Gaussian receptive fields for spiking encoding of numeric variables
Computer Research and Modeling, 2025, v. 17, no. 3, pp. 389-400Conversion of numeric data to the spiking form and information losses in this process are serious problems limiting usage of spiking neural networks in applied informational systems. While physical values are represented by numbers, internal representation of information inside spiking neural networks is based on spikes — elementary objects emitted and processed by neurons. This problem is especially hard in the reinforcement learning applications where an agent should learn to behave in the dynamic real world because beside the accuracy of the encoding method, its dynamic characteristics should be considered as well. The encoding algorithm based on the Gaussian receptive fields (GRF) is frequently used. In this method, one numeric variable fed to the network is represented by spike streams emitted by a certain set of network input nodes. The spike frequency in each stream is determined by proximity of the current variable value to the center of the receptive field corresponding to the given input node. In the standard GRF algorithm, the receptive field centers are placed equidistantly. However, it is inefficient in the case of very uneven distribution of the variable encoded. In the present paper, an improved version of this method is proposed which is based on adaptive selection of the Gaussian centers and spike stream frequencies. This improved GRF algorithm is compared with its standard version in terms of amount of information lost in the coding process and of accuracy of classification models built on spike-encoded data. The fraction of information retained in the process of the standard and adaptive GRF encoding is estimated using the direct and reverse encoding procedures applied to a large sample from the triangular probability distribution and counting coinciding bits in the original and restored samples. The comparison based on classification was performed on a task of evaluation of current state in reinforcement learning. For this purpose, the classification models were created by machine learning algorithms of very different nature — nearest neighbors algorithm, random forest and multi-layer perceptron. Superiority of our approach is demonstrated on all these tests.
-
Denoising fluorescent imaging data with two-step truncated HOSVD
Computer Research and Modeling, 2025, v. 17, no. 4, pp. 529-542Fluorescent imaging data are currently widely used in neuroscience and other fields. Genetically encoded sensors, based on fluorescent proteins, provide a wide inventory enabling scientiests to image virtually any process in a living cell and extracellular environment. However, especially due to the need for fast scanning, miniaturization, etc, the imaging data can be severly corrupred with multiplicative heteroscedactic noise, reflecting stochastic nature of photon emission and photomultiplier detectors. Deep learning architectures demonstrate outstanding performance in image segmentation and denoising, however they can require large clean datasets for training, and the actual data transformation is not evident from the network architecture and weight composition. On the other hand, some classical data transforms can provide for similar performance in combination with more clear insight in why and how it works. Here we propose an algorithm for denoising fluorescent dynamical imaging data, which is based on multilinear higher-order singular value decomposition (HOSVD) with optional truncation in rank along each axis and thresholding of the tensor of decomposition coefficients. In parallel, we propose a convenient paradigm for validation of the algorithm performance, based on simulated flurescent data, resulting from biophysical modeling of calcium dynamics in spatially resolved realistic 3D astrocyte templates. This paradigm is convenient in that it allows to vary noise level and its resemblance of the Gaussian noise and that it provides ground truth fluorescent signal that can be used to validate denoising algorithms. The proposed denoising method employs truncated HOSVD twice: first, narrow 3D patches, spanning the whole recording, are processed (local 3D-HOSVD stage), second, 4D groups of 3D patches are collaboratively processed (non-local, 4D-HOSVD stage). The effect of the first pass is twofold: first, a significant part of noise is removed at this stage, second, noise distribution is transformed to be more Gaussian-like due to linear combination of multiple samples in the singular vectors. The effect of the second stage is to further improve SNR. We perform parameter tuning of the second stage to find optimal parameter combination for denoising.
-
A general approach to constructing gradient methods for parameter identification based on modified weighted Gram – Schmidt orthogonalization and information-type discrete filtering algorithms
Computer Research and Modeling, 2025, v. 17, no. 5, pp. 761-782The paper considers the problem of parameter identification of discrete-time linear stochastic systems in the state space with additive and multiplicative noise. It is assumed that the state and measurements equations of a discrete-time linear stochastic system depend on an unknown parameter to be identified.
A new approach to the construction of gradient parameter identification methods in the class of discrete-time linear stochastic systems with additive and multiplicative noise is presented, based on the application of modified weighted Gram – Schmidt orthogonalization (MWGS) and the discrete-time information-type filtering algorithms.
The main theoretical results of this research include: 1) a new identification criterion in terms of an extended information filter; 2) a new algorithm for calculating derivatives with respect to an uncertainty parameter in a discrete-time linear stochastic system based on an extended information LD filter using the direct procedure of modified weighted Gram – Schmidt orthogonalization; and 3) a new method for calculating the gradient of identification criteria using a “differentiated” extended information LD filter.
The advantages of this approach are that it uses MWGS orthogonalization which is numerically stable against machine roundoff errors, and it forms the basis of all the developed methods and algorithms. The information LD-filter maintains the symmetry and positive definiteness of the information matrices. The algorithms have an array structure that is convenient for computer implementation.
All the developed algorithms were implemented in MATLAB. A series of numerical experiments were carried out. The results obtained demonstrated the operability of the proposed approach, using the example of solving the problem of parameter identification for a mathematical model of a complex mechanical system.
The results can be used to develop methods for identifying parameters in mathematical models that are represented in state space by discrete-time linear stochastic systems with additive and multiplicative noise.
-
LD filter for the state estimation of pairwise Markov models
Computer Research and Modeling, 2026, v. 18, no. 4, pp. 747-764The paper addresses the state estimation problem for pairwise Markov models with Gaussian noises. The class of pairwise Markov models generalizes the classical hidden Markov models. The key difference lies in the assumption that the Markov property holds not for the hidden process alone, but for the pair consisting of the state and the observation. This allows modeling more complex dependencies and, in particular, eliminates the requirement of Markovianity for the hidden process. For linear Gaussian pairwise models, Kalman filtering methods remain applicable, leading to the concept of the pairwise Kalman filter.
This work proposes a new modification of the pairwise Kalman filter based on the application of modified weighted Gram – Schmidt orthogonalization and the LD decomposition of covariance matrices. The main results are as follows: a novel LD modification of the pairwise Kalman filter (Theorem 1); a new LD-PKF algorithm for state estimation of pairwise Markov models, based on a direct procedure of modified weighted Gram–Schmidt orthogonalization and LD decomposition of covariance matrices (algorithm 2); results of comparative analysis on the numerical properties of pairwise discrete filtering algorithms.
The obtained theoretical results complement the theory of pairwise filtering in the class of linear discrete pairwise Markov models with Gaussian noises.
The developed algorithm is implemented in MATLAB. A series of numerical experiments are conducted, and the results demonstrate its effectiveness and numerical advantages over other existing modifications of the pairwise Kalman filter.
The presented results can be further used to develop new methods for parameter identification of pairwise Markov models.
-
Regularization, robustness and sparsity of probabilistic topic models
Computer Research and Modeling, 2012, v. 4, no. 4, pp. 693-706Views (last year): 25. Citations: 12 (RSCI).We propose a generalized probabilistic topic model of text corpora which can incorporate heuristics of Bayesian regularization, sampling, frequent parameters update, and robustness in any combinations. Wellknown models PLSA, LDA, CVB0, SWB, and many others can be considered as special cases of the proposed broad family of models. We propose the robust PLSA model and show that it is more sparse and performs better that regularized models like LDA.
-
Subsystem “Developer” as a part of the Retail Payment System
Computer Research and Modeling, 2013, v. 5, no. 1, pp. 25-36In this paper we consider one of the core subsystems of the retail payment system named “Developer”. The Queuing System for modeling this subsystem was developed and information about it is provided. The task for the assignment problem was set up and solved (the modification of the Hungarian algorithm was used). Information about Agent Based Model for subsystem “Developer” and the results of the simulation experiments are given.
Indexed in Scopus
Full-text version of the journal is also available on the web site of the scientific electronic library eLIBRARY.RU
The journal is included in the Russian Science Citation Index
The journal is included in the RSCI
International Interdisciplinary Conference "Mathematics. Computing. Education"




